View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_high_4 (Length: 383)
Name: NF8670_high_4
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 2 - 369
Target Start/End: Complemental strand, 19575135 - 19574764
Alignment:
| Q |
2 |
aatgggagctaggagatcatcttcttcgtccttatgcaacgtattcaaagcatgtttcgcaagtggaaacaatgatgaatattgggaaggtagtggaagt |
101 |
Q |
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| T |
19575135 |
aatgggagctaagagatcatcttcttcttccttatgcaatgtattcaaagcatgtttctcaagtggaaacaatgatgaatattgggaaggtagtggaagt |
19575036 |
T |
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| Q |
102 |
ggaagaagaatgtttgcaagtgatgaagatagaggttgttgggttgctgagcctggtattgataggaaagcttctgatttcattgctagatactacgcga |
201 |
Q |
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| T |
19575035 |
ggaagaagaatgtttgcaagtgatgaagatagaggttgttgggttgctgagcctggtattgataggaaagcttctgatttcattgctagatactacgcga |
19574936 |
T |
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| Q |
202 |
ctcgagttaccgactctcaaagccaatttgcttcttgaattaattgcttttcttcattgatttttcattgcttgaataattaagtagctattttttcacc |
301 |
Q |
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| T |
19574935 |
ctcgagttaccgactctcaaagccaatttgcttcttgaattaattgcttttcttcattgatttttcattgcttaaataattaagtagctatttttccacc |
19574836 |
T |
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| Q |
302 |
ctcatttactatgaccaattgtactttgttc----ctacctcattcttttgtccttcctaatcccttgatgt |
369 |
Q |
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| T |
19574835 |
ctcatttactatgaccaattgtactttgttcctagctacctcattcttttgtccttcttaatcccttgatgt |
19574764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 232
Target Start/End: Complemental strand, 19567726 - 19567580
Alignment:
| Q |
86 |
ggaaggtagtggaagtggaagaagaatgtttgcaagtgatgaagatagaggttgttgggttgctgagcctggtattgataggaaagcttctgatttcatt |
185 |
Q |
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| T |
19567726 |
ggaaggtagtgggagaggaaggaggatatttacaagtgatgaagatataggaacttggattggagagccagatattgatagaaaagcttctgatttcatt |
19567627 |
T |
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| Q |
186 |
gctagatactacgcgactcgagttaccgactctcaaagccaatttgc |
232 |
Q |
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| T |
19567626 |
gctaaatattatgctactagagtcactaactctcaaagccaatttgc |
19567580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 51294391 - 51294478
Alignment:
| Q |
105 |
agaagaatgtttgcaagtgatgaagatagaggttgttgggttgctgagcctggtattgataggaaagcttctgatttcattgctagat |
192 |
Q |
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| T |
51294391 |
agaaggatatttgcaagtgatgaagacagaggtcgttgggttgctgagcctggtattgacaagaaagcttctgctttcattgctagat |
51294478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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