View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8670_high_5 (Length: 356)
Name: NF8670_high_5
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 39188535 - 39188879
Alignment:
| Q |
1 |
atgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgcagggtcagaggtggtacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39188535 |
atgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgcagggtcagaggtggtacaa |
39188634 |
T |
|
| Q |
101 |
aacggcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggaggaaactttgtttccggagctaattttgttggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39188635 |
aacggcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggagggaactttgtttccggagctaattttgttggct |
39188734 |
T |
|
| Q |
201 |
taggcaacggaactgctaaaggtggctctcccaaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39188735 |
taggcaacggaactgctaaaggtggctctcccaaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctga |
39188834 |
T |
|
| Q |
301 |
tatcatggcagcctttgatatggctattcatgatggggttgatgt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39188835 |
tatcatggcagcctttgatatggctattcatgatggggttgatgt |
39188879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 56230813 - 56231153
Alignment:
| Q |
8 |
aaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgc---agggtcagaggtggtacaaaacg |
104 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| |||| |
|
|
| T |
56230813 |
aaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaatggtactacagaacg |
56230912 |
T |
|
| Q |
105 |
gcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggaggaaactttgtttccggagctaattttgttggcttagg |
204 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| || |||||||||| |
|
|
| T |
56230913 |
gcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagttaatgtttttggcttagg |
56231012 |
T |
|
| Q |
205 |
caacggaactgctaaaggtggctctcccaaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatc |
304 |
Q |
| |
|
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| || || ||| |||||||||||||| |
|
|
| T |
56231013 |
aaatggaactgcgaaaggtggttctcccaaagcaagagttgctgcttacaaagtctgttggccagcaattgatcacaacggatgttttgatgctgatata |
56231112 |
T |
|
| Q |
305 |
atggcagcctttgatatggctattcatgatggggttgatgt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
56231113 |
atggcagcctttgatatggctattcatgatggagttgatgt |
56231153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 346
Target Start/End: Complemental strand, 37108502 - 37108389
Alignment:
| Q |
233 |
aaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatg |
332 |
Q |
| |
|
|||||||||||||| | |||||||| || ||||| |||||| ||||| ||| ||||||||||| || || | ||||| |||||| ||||| |||| |
|
|
| T |
37108502 |
aaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatg |
37108403 |
T |
|
| Q |
333 |
atggggttgatgtc |
346 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
37108402 |
atggtgttgatgtc |
37108389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University