View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_high_6 (Length: 340)
Name: NF8670_high_6
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 336
Target Start/End: Original strand, 38737374 - 38737716
Alignment:
| Q |
3 |
aatagagaaaatcgaggaacttctaggctggtgacaaaagctagaaagcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtg |
102 |
Q |
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| T |
38737374 |
aatagagaaaatcgaggaacttctaggctggtgacaaaagctagaaagcttacttggggaaggggtggttttcggagtaacacaagatatggcagtggtg |
38737473 |
T |
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| Q |
103 |
gtggtagcaacggcaagagttcccgtagtggtcgaatgtctaggttggttgattatctcaaaaacttgaatgagaacactgatgaggtataagttc---- |
198 |
Q |
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| T |
38737474 |
gtggtagcaacggcaagagttcccgtagtggtcgaatgtctaggttggttgattatctcaaaaacttgaatgagaacactgatgaggtataagttctttt |
38737573 |
T |
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| Q |
199 |
-----nnnnnnnnctctctctcttgtaatggaccaatgaaaaatgatactacgtattgcttctttattatacttgtattcttatttcagttcaatttaac |
293 |
Q |
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| T |
38737574 |
tttttttttttctctctctctcttgtaatggaccaatgaaaaatgatactacgtattgcttctttattatacttgtattcttatttcagttcaatttaac |
38737673 |
T |
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| Q |
294 |
aaatagataccgtcttttatttacagtttgatgtccatctcat |
336 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
38737674 |
aaatagatactgtcttttatttacagtttgatgttcatctcat |
38737716 |
T |
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