View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_high_9 (Length: 227)
Name: NF8670_high_9
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 42837296 - 42837506
Alignment:
| Q |
1 |
tacctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttttgctcctacacctcctttaaccaatttcaaccc |
100 |
Q |
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| T |
42837296 |
tacctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttttgctcctacacctcctttaaccaatttcaaccc |
42837395 |
T |
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| Q |
101 |
tcccaaatcatcatctctccaacaactacctcaaaaaccttctgttaaaaccttgaaaacctctcttgttgttactacaaatccagtattagagaaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837396 |
tcccaaatcatcatctctccaacaactacctcaaaaaccttctgttaaaaccttgaaaacctctcttgttgttactacaaatccagtattagagaaagtt |
42837495 |
T |
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| Q |
201 |
actcctttgtc |
211 |
Q |
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||||||||||| |
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| T |
42837496 |
actcctttgtc |
42837506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 43915016 - 43914867
Alignment:
| Q |
1 |
tacctaattttgtttcttctctcgacctttctctcaaagttctctcttctttcaaccaccgtccttttgctcctaca------------cctcctttaac |
88 |
Q |
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|||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
43915016 |
tacctaatcttgtttcttctcttgacctttctctgaaagttctctcttctttcaaccaccgtccttttgctcctacaccccctctccctcctcctctaac |
43914917 |
T |
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| Q |
89 |
caatttcaaccctcccaaatcatcatctctccaacaactacctcaaaaacctt |
141 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
43914916 |
caatttcaacccttccaa---atcatctctccaacaactacctcaaaaccctt |
43914867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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