View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_low_10 (Length: 363)
Name: NF8670_low_10
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 1517483 - 1517540
Alignment:
| Q |
291 |
atcatgacattggaacaaagtgcttcaataatgccaacgataatggtccatttgatgt |
348 |
Q |
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| T |
1517483 |
atcatgacattggaacaaagtgcttcaataatgccaaccataatggtccatttgatgt |
1517540 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 1517438 - 1517467
Alignment:
| Q |
19 |
caagagccactaaataaggcttatggtatc |
48 |
Q |
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| T |
1517438 |
caagagccactaaataaggcttatggtatc |
1517467 |
T |
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