View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8670_low_16 (Length: 244)

Name: NF8670_low_16
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8670_low_16
NF8670_low_16
[»] chr7 (2 HSPs)
chr7 (1-231)||(19278833-19279066)
chr7 (28-133)||(27308214-27308319)
[»] chr1 (1 HSPs)
chr1 (2-231)||(3978706-3978936)
[»] chr3 (5 HSPs)
chr3 (1-231)||(54653359-54653592)
chr3 (1-218)||(13077365-13077587)
chr3 (1-231)||(51825004-51825238)
chr3 (3-231)||(47807317-47807548)
chr3 (52-114)||(43102922-43102984)
[»] chr5 (3 HSPs)
chr5 (1-231)||(10085240-10085474)
chr5 (65-231)||(27893375-27893543)
chr5 (1-231)||(1663866-1664105)
[»] chr2 (1 HSPs)
chr2 (1-176)||(42027683-42027861)
[»] chr4 (2 HSPs)
chr4 (5-110)||(3217126-3217231)
chr4 (5-146)||(26789010-26789152)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 19278833 - 19279066
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  19278833 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaactcctacatctattttgggattg 19278932  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaactcaacaatttattaaccagaag 197  Q
    |||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||| ||| ||||     
T  19278933 gagaactttcaccggcgaccaccgtgccggaaaccgctacaaccgcgccggtgaccaccacttaatttctgcaaaaactcaacaatttatgaactagaat 19279032  T
Q  198 catacaattactccattcttcccttcttctattc 231  Q
    |||||||||||||||||||| |||||||||||||    
T  19279033 catacaattactccattctttccttcttctattc 19279066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 27308319 - 27308214
Alignment:
Q  28 tttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattggagaactttcaccggctaccaccgtgc 127  Q
    |||||||||||||  | || ||| |||| |||||||||||  ||||||||||||   || ||||| ||||||| ||||||||||||| | ||||||||||    
T  27308319 tttgaaaaactaaattaatattcatcttccccatgatgtcaacaacaaaaccccccaatttatttcgggattgaagaactttcaccgtcaaccaccgtgc 27308220  T
Q  128 aggaaa 133  Q
     |||||    
T  27308219 cggaaa 27308214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 3978936 - 3978706
Alignment:
Q  2 tactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattgg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  3978936 tactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctacatctattttggga-tgg 3978838  T
Q  102 agaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaactcaacaatttattaaccagaagc 198  Q
    |||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  3978837 agaactttcacc-gcgaccaccgtgccggaaaccgctgcaaccacgccggtgaccaccacttaatttctgcaaaaactcaacaatttatgaaccagaagc 3978739  T
Q  199 atacaattactccattcttcccttcttctattc 231  Q
     ||||||||||||||||||||||||||||||||    
T  3978738 gtacaattactccattcttcccttcttctattc 3978706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 54653592 - 54653359
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  54653592 ttacttttcagccaccacaaatctccatttgaaaaactaatatgattttcttcttacacatgatgtctgcaacaaaacccctacatctattttgggattg 54653493  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaactcaacaatttattaaccagaag 197  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||| |   ||||| ||||||||||||| ||||| ||||| |||    
T  54653492 gagaactttcaccggcaaccactgtgccagaaaccgctgcaaccgcgccggtgaccaccatttaatttctacaaaaactcaacagtttatgaaccataag 54653393  T
Q  198 catacaattactccattcttcccttcttctattc 231  Q
    |||||||||||| |||||||||||||||||||||    
T  54653392 catacaattactacattcttcccttcttctattc 54653359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 13077587 - 13077365
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| ||||| ||||| |||||||||||||||||| |  || ||||||||||| |    
T  13077587 ttactttccggccaccgcaaatctccattcaaaaaactaatatgattttattcttccccatcatgtctgcaacaaaacccatatatttattttgggatcg 13077488  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccac---ttttctgcaaaaactc--aacaatttattaaccaga 195  Q
    |||||||||||||||| |||||||  | ||||||||||||||||| | ||| ||||| | |    |||||||||||||||  ||||||||||||||||||    
T  13077487 gagaactttcaccggcgaccaccgcaccggaaaccgctgcaaccgtgtcggcgaccaacgcataatttctgcaaaaactcaaaacaatttattaaccaga 13077388  T
Q  196 agcatacaattactccattcttc 218  Q
    |||||||||||||||||||||||    
T  13077387 agcatacaattactccattcttc 13077365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 51825238 - 51825004
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||  || ||||||||| | |    
T  51825238 ttactttccagccaccacaaatctccatttgaaaaactaatatgattttcttcttcctcattatgtctgcaacaaaacccctatatttattttggggtcg 51825139  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaactcaacaatttattaa-ccagaa 196  Q
     |||| ||||| |||| |||||||  | ||||||   |||||| ||| | ||||||||| ||   ||| ||||||||||||||||||||| || ||| ||    
T  51825138 aagaaatttcatcggcgaccaccgcaccggaaactattgcaactgcgtcagtgaccaccgcttaatttatgcaaaaactcaacaatttatgaacccaaaa 51825039  T
Q  197 gcatacaattactccattcttcccttcttctattc 231  Q
    |||||||||||||| |||||||| ||||| |||||    
T  51825038 gcatacaattactcaattcttccattcttttattc 51825004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 47807317 - 47807548
Alignment:
Q  3 actttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattgga 102  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |   |||||||||||||||||||| |  || ||||||||||| | |    
T  47807317 actttccggccaccacatatctcgatttgaaaaactaatatgattttcttctttcatgtgatgtctgcaacaaaacccgtatatttattttgggatcgaa 47807416  T
Q  103 gaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaactcaacaatttattaa-ccagaagc 198  Q
    |||||||| ||||| ||||||| || |||||| ||||||||||||||||  |||||| ||   ||| ||||||||||||  |   ||| || ||| ||||    
T  47807417 gaactttcgccggcgaccaccgcgccggaaactgctgcaaccgcgccgg-caccaccgcttaatttatgcaaaaactcataacaatatgaacccaaaagc 47807515  T
Q  199 atacaattactccattcttcccttcttctattc 231  Q
    |||||||||||||||| ||||||| ||||||||    
T  47807516 atacaattactccatttttcccttattctattc 47807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 43102984 - 43102922
Alignment:
Q  52 tcttacccatgatgtctgcaacaaaacccctgcatctattttgggattggagaactttcaccg 114  Q
    |||| ||||| ||||||||||||||||||||  || ||||||||||| | | |||||||||||    
T  43102984 tcttccccataatgtctgcaacaaaacccctaaatttattttgggatcgaaaaactttcaccg 43102922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10085474 - 10085240
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  || |||||||||||      
T  10085474 ttactttccggccaccacaaatctttatttgaaaaactaatatgattttcttcttccccatgatgtctgcaacaaaa-ccctatatttattttgggatca 10085376  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaact--caacaatttattaa-ccag 194  Q
    |||||||||||||||| |||||   || |||||| ||||||||| |||||||||||| | ||   ||||||||||||||  ||||||||||| || ||||    
T  10085375 gagaactttcaccggcgaccactacgccggaaactgctgcaaccacgccggtgaccatcgcttaatttctgcaaaaactcacaacaatttatgaacccag 10085276  T
Q  195 aagcatacaattactccattcttcccttcttctattc 231  Q
    |||||||||| |||||||||||||||||||| |||||    
T  10085275 aagcatacaa-tactccattcttcccttcttatattc 10085240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 65 - 231
Target Start/End: Original strand, 27893375 - 27893543
Alignment:
Q  65 gtctgcaacaaaacccctgcatctattttgggattggagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccactt- 163  Q
    |||||||||||||||||   || ||||||||||| |||||||||||||||||  ||||||||| | |||||| ||||||||||||||||||||||||||     
T  27893375 gtctgcaacaaaaccccaatatatattttgggatcggagaactttcaccggcggccaccgtgccg-aaaccgttgcaaccgcgccggtgaccaccactta 27893473  T
Q  164 --ttctgcaaaaactcaacaatttattaaccagaagcatacaattactccattcttcccttcttctattc 231  Q
      || ||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||    
T  27893474 atttttgcaaaaactcaacaatttatgaaccagaagtgtacaattactccattcttcccttcttctattc 27893543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1664105 - 1663866
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||  || ||||||||||| |    
T  1664105 ttactttccgactaccacaaatctcaatttgaaaaactaatatgattttcttcttccctgtgatgtctgcaacaaaacccctatatttattttgggatcg 1664006  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgcc----ggtgaccaccactt---ttctgcaaaaactca--acaatttattaa- 190  Q
     ||||||||| ||||| ||||| | || |||||| ||||||||||||||    ||| |||||| |||   || ||||||||||||  ||||||||| ||     
T  1664005 aagaactttcgccggcgaccactgcgccggaaactgctgcaaccgcgccagcaggt-accaccgcttaaattatgcaaaaactcattacaatttatgaac 1663907  T
Q  191 ccagaagcatacaattactccattcttcccttcttctattc 231  Q
    ||| |||||||||||||||||||| ||| ||||||||||||    
T  1663906 ccaaaagcatacaattactccattattctcttcttctattc 1663866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 42027683 - 42027861
Alignment:
Q  1 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||  || ||||||||||| |    
T  42027683 ttactttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttccccataatgtctgcaacaaaatccctaaatttattttgggatcg 42027782  T
Q  101 gagaactttcaccggctaccaccgtgcaggaaaccgctgcaaccgcgccggtgaccaccact---tttctgcaaaaact 176  Q
     | ||||||||||| | ||||||| |  ||||||  || | ||| |||||| ||||||| ||   ||||||||||||||    
T  42027783 aaaaactttcaccgacgaccaccgcgtcggaaactactacgaccccgccggcgaccaccgcttaatttctgcaaaaact 42027861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 3217231 - 3217126
Alignment:
Q  5 tttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatctattttgggattggaga 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||  || |||||||||||| ||||    
T  3217231 tttccggccaccacaaatctctatttgaaaaactaatatgattttcttcttccccataatgtttgcaacaaaacccctatatttattttgggattagaga 3217132  T
Q  105 actttc 110  Q
    ||||||    
T  3217131 actttc 3217126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 26789010 - 26789152
Alignment:
Q  5 tttccggccaccacaaatctccatttgaaaaactaatatgattttcttcttacccatgatgtctgcaacaaaacccctgcatcta-ttttgggattggag 103  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||  || || ||||||||| |||     
T  26789010 tttccggccaccacaaatctccgtttgaaaaattaatatgattttcttcttctccattatgtctgcaacaaaacccctatatttatttttgggatcggat 26789109  T
Q  104 aactttcaccggctaccaccgtgcaggaaaccgctgcaaccgc 146  Q
    |||||||| || | ||||||| || ||||| || | |||||||    
T  26789110 aactttcatcgacgaccaccgcgccggaaaacgttacaaccgc 26789152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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