View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_low_18 (Length: 229)
Name: NF8670_low_18
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5413806 - 5413568
Alignment:
| Q |
1 |
tcaaataaggtgtggacgtgtcagacatggttcagagatgtcgtacaagtcagtggtttttactagctcaagcatgttagctataacattattaaccaca |
100 |
Q |
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| T |
5413806 |
tcaaataaggtgtggacgtgtcagacatggttcagagatgtcgtacaagtcagtggtttttactagctcaagcatgttagctataacattattaaccata |
5413707 |
T |
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| Q |
101 |
actcgttgt----------taagagctggcacaagtagatttccagtttccatctttcgattggggagattacaataacactggataatgtgtcatgtct |
190 |
Q |
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| T |
5413706 |
gctcgttgtctgaatttgttaagagctggcacgagtagatttccagtttccatctttcgattggggagattacaataacactggataatgtgtcatgtct |
5413607 |
T |
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| Q |
191 |
gatgcatctccccgtcgaggaccgcctcatggactttga |
229 |
Q |
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| T |
5413606 |
gatgcatctcccagtcgaggaccgcctcatggactttga |
5413568 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 9716759 - 9716677
Alignment:
| Q |
20 |
gtcagacatggttcagagatgtcgtacaagtcagtggtttttactagctcaagcatgttagctataacattattaaccacaac |
102 |
Q |
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| T |
9716759 |
gtcagccatggtttagagattccctacaagatcgtggtctttactagctcaagcatgttagctataacattaatgaccacaac |
9716677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 21118260 - 21118330
Alignment:
| Q |
138 |
ttccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtcga |
208 |
Q |
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| T |
21118260 |
ttccatttttcgattaaggagataacaatgacacttgatgatgtgtcatgtttgctgcatctccccatcga |
21118330 |
T |
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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 39469115 - 39469047
Alignment:
| Q |
138 |
ttccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtc |
206 |
Q |
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| T |
39469115 |
ttccgtctttcgatgagggagatgacaatgacacttgataatgtgtcatgtttgttgcatctccccgtc |
39469047 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 43453237 - 43453163
Alignment:
| Q |
127 |
agatttccagtttccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctcc |
201 |
Q |
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| T |
43453237 |
agatttcaagcttccatcttccgtttggggagatgacaatgacacttgatgatgtgtcatgtttgttgcatctcc |
43453163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 26184020 - 26184078
Alignment:
| Q |
150 |
attggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtcga |
208 |
Q |
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| T |
26184020 |
attggggagatgacattgacactggatgatgtgccatgtctgctgcatctccacgtcga |
26184078 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 1781319 - 1781374
Alignment:
| Q |
47 |
aagtcagtggtttttactagctcaagcatgttagctataacattattaaccacaac |
102 |
Q |
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| T |
1781319 |
aagtcagtggtctttactggctcaagcatgtgagcaataacataattgaccacaac |
1781374 |
T |
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