View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_low_3 (Length: 453)
Name: NF8670_low_3
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 453
Target Start/End: Original strand, 31342560 - 31342989
Alignment:
| Q |
20 |
aaactgagtagatgtgaaaagacagcattaagttatacatatctagcattattataaaataaacccagaataaaaaaggttggacggttggtcccaaccc |
119 |
Q |
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| T |
31342560 |
aaactgagtagatgtgaaaagacagcatttagttatacatatctagcattattataaaataaacccagaataaaaaaggttggacggttggtcccaaccc |
31342659 |
T |
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| Q |
120 |
aacattaggggctattttggtcaatacacaagggaagaaaaaaggggaaagaagaggaggtcattttcacactaaataaacaaacagtcaaatactgcgg |
219 |
Q |
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| T |
31342660 |
aacattaggggctattttggtcaatacacaaggcaagaaaaaaggggaaagaagaggaggtcattttcacactaaataaac----agtcaaatactgcgg |
31342755 |
T |
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| Q |
220 |
tgaccttacgctaccaaagtccaacatcactctacactacactgcatggcttcactcatttcattttcatctccttcaccttttcataatataaattaat |
319 |
Q |
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| T |
31342756 |
tgaccttacgctaccaaagtccaacatcactctacactacactgcatggcttcactcatttcattttcatctccttcaccttttcataatataaattaat |
31342855 |
T |
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| Q |
320 |
tttctaaagagggaagaacaaatattcttcaaaataaaattaaagaaaagacttagatattaagcaaaaatacattaccttaacttcttcatagagcttc |
419 |
Q |
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| T |
31342856 |
tttctaaagagggaagaacaaatattcttcaaaataaaattaaagaaaagacttagatattaagcaaaaatacattaccttaacttcttcatagagcttc |
31342955 |
T |
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| Q |
420 |
ttctcccaagccaaaagccgttctaaactggagc |
453 |
Q |
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| T |
31342956 |
ttctcccaagccaaaagccgttctaaactggagc |
31342989 |
T |
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