View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_low_4 (Length: 448)
Name: NF8670_low_4
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 6109118 - 6109528
Alignment:
| Q |
20 |
caaaggcgttgattaatctgttcataaatgctggtctggataaatatttgttccccgtgtctgatatgccaaaaaatggtgaagattggcctactataac |
119 |
Q |
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| T |
6109118 |
caaaggcgttgattaatctgttcataaatgctggtctggataaatatttgttccccgtgtctgatatgccaaaaaatggtgaagattggcctactataac |
6109217 |
T |
|
| Q |
120 |
acagatggctcaagcaaatcgccgacttcttgttttcacttctgatgcttcaaaggaagctgaagaaggaatagcttatcagtggaggtacatgattgaa |
219 |
Q |
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| T |
6109218 |
acagatggctcaagcaaatcgccgacttcttgttttcacttctgatgcttcaaaggaagctgaagaaggaatagcttatcagtggaagtacatgattgaa |
6109317 |
T |
|
| Q |
220 |
aatgaatgtaagtgtaatgtccttttgctacatggatatctttgctatatatcataaccctgtttggatagacaacttcaactgattgctcatcatacaa |
319 |
Q |
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| T |
6109318 |
aatgaatgtaagtgtaatgtccttttgctacatggatatctatgctatatatcataaccctgtttggataaacaacttcaactacttgctcatcatacaa |
6109417 |
T |
|
| Q |
320 |
gtgcttgtgtgtaagctgtgtgtctataacaaatgataaaataaagtcacagttttcatattagctatataagctattctcattagctatgttcgagagc |
419 |
Q |
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| T |
6109418 |
gtgcttgtgtgtaagctgtgtgtctataacaaatgataaaataaagtcacagttttcatattagc--tataagctattctcattagctatgttcgagagc |
6109515 |
T |
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| Q |
420 |
ttttggaaataag |
432 |
Q |
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| T |
6109516 |
ttttggaaataag |
6109528 |
T |
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Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 39066012 - 39065814
Alignment:
| Q |
33 |
taatctgttcataaatgctggtctggataaatatttgttccccgtgtctgatatgccaaaaaatggtgaagattggcctactataacacagatggctcaa |
132 |
Q |
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|||||| |||| || |||||| ||||||| |||| ||| |||||||| | ||||| ||||| ||| | |||||||| ||| |||| |||||| |||| |
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| T |
39066012 |
taatcttttcacaagtgctggattggataagtattggtttcccgtgtcaaagatgccgaaaaagggtaatgattggcccactgtaaccgagatggttcaa |
39065913 |
T |
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| Q |
133 |
gcaaatcgccgacttcttgttttcacttctgatgcttcaaaggaagctgaagaaggaatagcttatcagtggaggtacatgattgaaaatgaatgtaag |
231 |
Q |
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||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | || || |||||||||| |||||| |
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| T |
39065912 |
gcaaatcaccgacttgttgttttcacttctgatgcttcgaaggaagctggagaaggaatagcttatcagtggaagcacgtggttgaaaatgagtgtaag |
39065814 |
T |
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