View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_low_7 (Length: 423)
Name: NF8670_low_7
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 38228778 - 38229158
Alignment:
| Q |
16 |
acatcattgcaaacataacaataattaacagtgactgtaacataaaccctagtagttcaattttgttaaagagaattttctgattcatggcgacatggta |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38228778 |
acataattgcaaacataacaataattaacagtgactgtaacataaaccctagtagttcaattttgttaaagagaattttctgattcatggcgacatggta |
38228877 |
T |
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| Q |
116 |
tgatgaatcgaagaatttgttaaataataaaatttagaaaaagaaagtagttaccatgttgatgttgatgttgatgattggtgtgtttgaacttcaagtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38228878 |
tgatgaatcgaagaatttgttaaataataaaatttagaaaaagaaagtagttaccatgttgatgttgatgttgatgattggtgtgtttgaacttcaagtg |
38228977 |
T |
|
| Q |
216 |
ccgtcgatgatgaagttgagcgattcaaaagagcagagtgtgagagaaagcggaggaaggaaagagaaccctcactttgtgattgttcttgattcttctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38228978 |
ccgtcgatgatgaagttgagcgattcaaaagagcagagtgtgagagaaagcggaggaaggaaagagaaccctcactttgtgattgttcttgattcttctt |
38229077 |
T |
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| Q |
316 |
tattcccctgtatttatagagaaacttaaatgaaacatgnnnnnnnttgaacaactcaccaaaagtctaagtgttgcagca |
396 |
Q |
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| T |
38229078 |
tattcccctgtatttatagagaaacttaaatgaaacatgaaaaaaattgaacaactcaccaaaagtctaagtgttgcagca |
38229158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 20159741 - 20159824
Alignment:
| Q |
16 |
acatcattgcaaacataacaataattaacagtgactgtaacataaaccctagtagttcaattttgttaaagagaattttctgat |
99 |
Q |
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| T |
20159741 |
acatgattgcaaacataaaaataattaacggtgactatagcataaaccctagtgcttcaattttgttaaagagaattttctgat |
20159824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 20197728 - 20197645
Alignment:
| Q |
16 |
acatcattgcaaacataacaataattaacagtgactgtaacataaaccctagtagttcaattttgttaaagagaattttctgat |
99 |
Q |
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|||| ||||||||||||| |||||||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20197728 |
acatgattgcaaacataaaaataattaacggtgactatagcataaaccctagtgcttcaattttgttaaagagaattttctgat |
20197645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 20159970 - 20160035
Alignment:
| Q |
235 |
gcgattcaaaagagcagagtgtgagagaaagcggaggaaggaaagagaaccctcactttgtgattg |
300 |
Q |
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| T |
20159970 |
gcgattcaaaagagcagagtgtgagagaaggtggaggagggaaagagaaccctcactttctgattg |
20160035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 20197499 - 20197434
Alignment:
| Q |
235 |
gcgattcaaaagagcagagtgtgagagaaagcggaggaaggaaagagaaccctcactttgtgattg |
300 |
Q |
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||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||| |
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| T |
20197499 |
gcgattcaaaagagcagagtgtgagagaaggtggaggagggaaagagaaccctcactttctgattg |
20197434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 44282240 - 44282157
Alignment:
| Q |
16 |
acatcattgcaaacataacaataattaacagtgactgtaacataaaccctagtagttcaattttgttaaagagaattttctgat |
99 |
Q |
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|||| ||||||||||||| |||||||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44282240 |
acatgattgcaaacataaaaataattaacggtgactatagcataaaccctagtgcttcaattttgttaaagagaattttctgat |
44282157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 44282011 - 44281946
Alignment:
| Q |
235 |
gcgattcaaaagagcagagtgtgagagaaagcggaggaaggaaagagaaccctcactttgtgattg |
300 |
Q |
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||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||| |
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| T |
44282011 |
gcgattcaaaagagcagagtgtgagagaaggtggaggagggaaagagaaccctcactttctgattg |
44281946 |
T |
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