View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8670_low_9 (Length: 373)
Name: NF8670_low_9
Description: NF8670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8670_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 7344874 - 7345112
Alignment:
| Q |
18 |
tttttaagaatgttgctgttcacagtagtaaaaacagggaatcgcttttatgaagcattaaaagagcaaatatcgctcatcattggaattaaatataaaa |
117 |
Q |
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| T |
7344874 |
tttttaagaatgttgttgttcacagtagtaaaaacagtgaatcgcttttatgaagcattaaaagagcaaatatcgctcatcattggaattaaatataaaa |
7344973 |
T |
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| Q |
118 |
atattagtccgaaaatatgaaataaataatccattaaccaagcaattgagttcaagtgttaatgagttgtaccaaagacgaattgattgaaagaaagtag |
217 |
Q |
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| T |
7344974 |
atattagtctggaaatatgaaataaataacctattaaccaagcaatt-----------ttaatgagttgtaccaaagacgaatcgattgaaagaaagtag |
7345062 |
T |
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| Q |
218 |
gtttgattcttagacgaaacaatttttgatcagattatcattttttatcg |
267 |
Q |
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| T |
7345063 |
gtttgattcctagacgaaacaatctttgatcagattatcattttttatcg |
7345112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 7345297 - 7345401
Alignment:
| Q |
259 |
tttttatcggactattttgatccacggtcgaattccaacttatcaaggtccttttctgcaaataggagggttaacgtaaaataaaaagacaattgttcat |
358 |
Q |
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| T |
7345297 |
tttttatcggactattttgatccacgaccaaactccaaattatcaaggtccttctctgcaaataggagggttaacgtaaaataaaaagacaattgttcat |
7345396 |
T |
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| Q |
359 |
ctcac |
363 |
Q |
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| T |
7345397 |
gtcac |
7345401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 36018078 - 36018028
Alignment:
| Q |
150 |
attaaccaagcaattgagttcaagt-gttaatgagttgtaccaaagacgaa |
199 |
Q |
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| T |
36018078 |
attaactaagcaattgagttcaagtggttaatgagtttgaccaaagacgaa |
36018028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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