View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8671_high_10 (Length: 240)
Name: NF8671_high_10
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_high_10 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 13833743 - 13833912
Alignment:
| Q |
71 |
ctaatactataatttaacaagcgatgctttagtgcaaatatggatacgttagagttgagagtaaaatactcttattcgatggtgacaactcacaagtgta |
170 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13833743 |
ctaataatataatttaacaagcgatgctttagtgtaaatatggatacgttagagttgagagtaaaacactcttattcgatggtgaccactcacaagtgta |
13833842 |
T |
|
| Q |
171 |
tctgattcttcaacattattattactttccaccttcaaatttgtgattaggataaacacttttagaaaat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13833843 |
tctgattcttcaacattattattactttccaccttcaaatttgtgattaggataaacacttttagaaaat |
13833912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 13832608 - 13832664
Alignment:
| Q |
18 |
tgtggattagcatattcatccaatcctctttgatttttcctttaagagctaaactaa |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13832608 |
tgtggattagcatattcatccaatcctctttgatttttcctttaagagctaaactaa |
13832664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University