View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_high_2 (Length: 556)
Name: NF8671_high_2
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 29 - 411
Target Start/End: Complemental strand, 37493485 - 37493105
Alignment:
| Q |
29 |
caacaggtgctcttccgtacacatcggtcaggaatcgaattcatgaccgcatgcttaaggaactcagttagctgccaactttatcacaccgtatttgtaa |
128 |
Q |
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| T |
37493485 |
caacaggtgctcttccgtacacatcggtcaggaatcgaattcatgaccgcatgcttaaggaactcagttagctgccaactttgtcacaccatattggtaa |
37493386 |
T |
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| Q |
129 |
atgagtgagagcattagtgtggtgataatactatgaatatgtttgcaagtacatggaacgataaatattttgaaatgacggaataataaaa--cacaaat |
226 |
Q |
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| T |
37493385 |
atgagtgagagcattagtgtggtgataatactatgaatatgtttgaaagtacatggaacgataaatattttgaaatgacggaataataaaacacacaaat |
37493286 |
T |
|
| Q |
227 |
tatatgccgatcattggtgtgctatcttaaatttaaaacttatgtgggtcgatgaggcaatgagcatgaatctctttacgcagtctcatgtttgagtctt |
326 |
Q |
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| T |
37493285 |
tatatgccgatcattggtgtgctatcttaaatttaaaacttat----gtcgatgaggcagtgagcatgaatctctttacgcagtctcatgttcgagtctt |
37493190 |
T |
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| Q |
327 |
gtgaatggaaaacataggcacactggaaaagttttgccgccttatgtgcgtccacccggctcggatagtaacgagggtctagacc |
411 |
Q |
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| T |
37493189 |
gtgaatggaaaacataggcacactggaaaagttttgccgccttatgtgcgtccacccggctcggagagtaacgagggtctagacc |
37493105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 37493046 - 37492974
Alignment:
| Q |
470 |
gattagaacgaaatcaaaaccttctgttggtttgagtcttgattaaataaaaatggttgatctttgtagtatt |
542 |
Q |
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| T |
37493046 |
gattagaacgaaatcaaaaccttctgttggtttgagtcttgattaaataaaaatggttgatctttgtagtatt |
37492974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 338
Target Start/End: Complemental strand, 2702829 - 2702801
Alignment:
| Q |
310 |
tctcatgtttgagtcttgtgaatggaaaa |
338 |
Q |
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| T |
2702829 |
tctcatgtttgagtcttgtgaatggaaaa |
2702801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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