View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_high_5 (Length: 362)
Name: NF8671_high_5
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 51502166 - 51501879
Alignment:
| Q |
17 |
atcaagaaaaaataactgattcaaggtgagatatcgcactgaaaacagaggattatcaaagattcatgcacacctggagttgacaattcacaattattta |
116 |
Q |
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| T |
51502166 |
atcaagaaaaaataactgattcaaggtgagacatcacacagaaaacagaggattatcaaagattcatgcacacctggagttgataattcacaattattta |
51502067 |
T |
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| Q |
117 |
ataaaatgaagagactaggttgtcacatgattacattttcaagtggtatatccacaaactaatttttactggtaaatttattaatgtggctaattttcgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51502066 |
ataaaatgaagagactaggttgtcacatgattacattttcaagtggtatatccacaaactaatttttactggtaaatttattaatgtggctaattttcgt |
51501967 |
T |
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| Q |
217 |
tgtttgttgagtaaattacacacaattcttcaaagattacattaaaaataccttaaataaaagagacgaaaaaggagagatgaggata |
304 |
Q |
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| T |
51501966 |
tgtttgttcagtaaattacacacaattcttcaaagattacattaaaaataccttaaataaaagagacaaaaaaggagagatgaggata |
51501879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 51497154 - 51497040
Alignment:
| Q |
17 |
atcaagaaaaaataactgattcaaggtgagatatcgcactgaaaacagaggattatcaaagattcatgcacacctggagttgacaattcacaattattta |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51497154 |
atcaagaaaaaataactgattcaaggtgagacatcgcactgaaaacagaggattatcaaagattcatgcacacctggagttgacaattcacaattattta |
51497055 |
T |
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| Q |
117 |
ataaaatgaagagac |
131 |
Q |
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| T |
51497054 |
ataaaataaagagac |
51497040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 51501831 - 51501770
Alignment:
| Q |
301 |
gatactagcaaatataaggaggaagctgaaagacgtaacccgaagaggggtaagaagtgcac |
362 |
Q |
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| T |
51501831 |
gatactagcaaatataaggaggaagctgaaagacgaaacccaaagaggggtaagaagtgcac |
51501770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 24750494 - 24750557
Alignment:
| Q |
183 |
tactggtaaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaattctt |
246 |
Q |
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| T |
24750494 |
tacttgtacatttattgatgtggctaattttcattgtttgatgagtaaattacccacaattctt |
24750557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 24765512 - 24765626
Alignment:
| Q |
192 |
atttattaatgtggctaattttcgttgtttgttgagtaaattacacacaattcttcaaagattacattaaaaataccttaaataaaagagacgaaaa--- |
288 |
Q |
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| T |
24765512 |
atttattaatgtggctaattttcatagtttgttgagtaaacaacccccaattctttaaaggtaacctaaaata-accttaaacaaaagagacaaaaaaaa |
24765610 |
T |
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| Q |
289 |
aggagagatgaggata |
304 |
Q |
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|||||||||| ||||| |
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| T |
24765611 |
aggagagatggggata |
24765626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 26257091 - 26257046
Alignment:
| Q |
206 |
ctaattttcgttgtttgttgagtaaattacacacaattcttcaaag |
251 |
Q |
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| T |
26257091 |
ctaatttttcttgtttgttgagtaaattactcacgattcttcaaag |
26257046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 34387313 - 34387260
Alignment:
| Q |
190 |
aaatttattaatgtggctaattttcgttgtttgttgagtaaattacacacaatt |
243 |
Q |
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|||||||| ||||||||||||||| ||| |||||| |||||||||||||||| |
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| T |
34387313 |
aaatttatccatgtggctaattttcattgcttgttggataaattacacacaatt |
34387260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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