View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_high_6 (Length: 331)
Name: NF8671_high_6
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 54474217 - 54473907
Alignment:
| Q |
7 |
catatacctgaattgatagccatatacaagtaggtagaaattatttggaatttgcaaaagattcatacataaataaatgtatatagtttgggttgaatta |
106 |
Q |
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| T |
54474217 |
catatacctgaattgatagccatatacaagtaggtagaaattatttggaatttgcaaaagattcatacataaataaatgtatatagtttgggttgaatta |
54474118 |
T |
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| Q |
107 |
ttattggttaattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccacctaaatgg |
206 |
Q |
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| T |
54474117 |
ttatt---taattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccacctaaatgg |
54474021 |
T |
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| Q |
207 |
atagaatcacttgataattacaattctttaataactaaacatatagtaaatgatcattatacgtactttggcttcaaagttgttttcaattagaatgttt |
306 |
Q |
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| T |
54474020 |
atagaatcacttgataattacaattctttaataactaaacatatagtaaatgatcattatacgtactttggcttcaaagttgttttcaattagaatgttt |
54473921 |
T |
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| Q |
307 |
gcacccttgatgtc |
320 |
Q |
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| T |
54473920 |
gcacccttgatgtc |
54473907 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 33145051 - 33145136
Alignment:
| Q |
116 |
aattacccaaatgttcccatcacacgagtagaaacatgagtgttagtgtcttgagtaaattttgccaatccaaaatctgccaccta |
201 |
Q |
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| T |
33145051 |
aattacccgaatgttcccatgacacgagttgagacatgtgtattagtatcggtagtcaacttagccaatccaaaatcagccaccta |
33145136 |
T |
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