View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_1 (Length: 949)
Name: NF8671_low_1
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 4e-84; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 711 - 944
Target Start/End: Original strand, 32122137 - 32122371
Alignment:
| Q |
711 |
gtttaagaaaggtgattgaaacaatgcaaaatacttacattatccgcatcaggaagttgtagcagacgttgctttaggagaggaataccagtctcaaaca |
810 |
Q |
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| T |
32122137 |
gtttaagaaaggtgactgaaacaatgcaaaatactcacattatcagcatcaggaagttgtagcagacgttgctttaggagaggaataccagtctcaaaca |
32122236 |
T |
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| Q |
811 |
atggcaaaacctcatctccg-aataaaacctctcctgcataatttcaaatcataagtagtaataaagactatagtacactgttaaaatatcaagtgcata |
909 |
Q |
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| T |
32122237 |
atggcaaaacctcatctccgaaataaaacctctcctgtataatttcaaatcaaaagtactaataaaacctatagcacactgttaaaatatcaaatacatg |
32122336 |
T |
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| Q |
910 |
gcctaaccatgctcttcaaactcaataagtttcta |
944 |
Q |
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| T |
32122337 |
gcctaaccgtgctcctaaaacgcaataagtctcta |
32122371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 282 - 529
Target Start/End: Original strand, 32121603 - 32121846
Alignment:
| Q |
282 |
atgctttctcaaacgagtctctaagtgttgcctattttcagctggtaaacataactgtaatcatcttcaaagatatacagaatcttttttaataagtata |
381 |
Q |
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| T |
32121603 |
atgctttctcaaacaagtctc-aagtgttggcaatttccggttggcaaactcaatcgtaataatcttcaaagatatacaaaatctttttgaacaagtata |
32121701 |
T |
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| Q |
382 |
catcttttacgatttagaaattaataattcaccggacactcgattaataattcgcctcaagattggactaaatcatcaacaatcactacatgatgaccag |
481 |
Q |
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| T |
32121702 |
catcttttgcgattaagaaattaataggttacctgacactcgattagggt---gcctccagattggactaaatcatcaacaatcacaacatgatgaccag |
32121798 |
T |
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| Q |
482 |
agacatgaccttccttgagccgaactatccacttgtcaccttcacgta |
529 |
Q |
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| T |
32121799 |
agacatgaccttccttgagcctaactatcctcttgtcaccttcacgta |
32121846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 785 - 944
Target Start/End: Original strand, 32123587 - 32123747
Alignment:
| Q |
785 |
taggagaggaataccagtctcaaacaatggcaaaacctcatctccgaa-taaaacctctcctgcataatttcaaatcataagtagtaataaagactatag |
883 |
Q |
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| T |
32123587 |
taggaaaggaataccagtctcaaacaatggcagaacctcatctccgaaataaaacctctcctgtataatttcaaatcataagtactaataaaatctatag |
32123686 |
T |
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| Q |
884 |
tacactgttaaaatatcaagtgcatagcctaaccatgctcttcaaactcaataagtttcta |
944 |
Q |
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| T |
32123687 |
cacactgttaaaatatcaactacatagcctaaccatgctcctaaaacgcaataagtctcta |
32123747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 529 - 664
Target Start/End: Original strand, 32121919 - 32122055
Alignment:
| Q |
529 |
agattcttatgagagaccgaccactgaataattgtcgaacagcttgtggaatcgcttccatgcaccgtcatctggaaatgcaataactacctggtaatga |
628 |
Q |
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| T |
32121919 |
agatacttatgggagaccgaccactgaataattgtcgaacagcttatggaatcgcttccatgcaccgtcatctggaaatgcaatgactacctgatcataa |
32122018 |
T |
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| Q |
629 |
caataataaattcaggctgcaggtatg-aaaatttgc |
664 |
Q |
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| T |
32122019 |
caataataaattaagactgcaggtatgtaaaatttgc |
32122055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 45 - 178
Target Start/End: Original strand, 32121357 - 32121492
Alignment:
| Q |
45 |
atatagagattaaggatctatttggtcagagaatatgctctattttcattttcacttttcacttttaattataaaa-tacca--ttttgttttcatgcta |
141 |
Q |
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| T |
32121357 |
atatagagattgagggtctatttggtttgagaa-atgctctattttcattttcaccttccacttttaattataaaattaccatttttttttttcattcta |
32121455 |
T |
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| Q |
142 |
tttaccattttaaaaaatttgtaacagaatcagtgga |
178 |
Q |
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| T |
32121456 |
tttaccattttaaaaattttgtaccagagtcggtgga |
32121492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 783 - 828
Target Start/End: Complemental strand, 24085530 - 24085485
Alignment:
| Q |
783 |
tttaggagaggaataccagtctcaaacaatggcaaaacctcatctc |
828 |
Q |
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| T |
24085530 |
tttaggagaggaataccagtctcagactatggcaaaacctcatctc |
24085485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 778 - 832
Target Start/End: Complemental strand, 29015221 - 29015167
Alignment:
| Q |
778 |
gttgctttaggagaggaataccagtctcaaacaatggcaaaacctcatctccgaa |
832 |
Q |
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| T |
29015221 |
gttgatttaggagaggaataccagtctcagactatgataaaacctcatctccgaa |
29015167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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