View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_10 (Length: 380)
Name: NF8671_low_10
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 26414549 - 26414706
Alignment:
| Q |
23 |
atacaagcaaatgggtacaagagagaccaccaccaaatccctaatgaggctcacgtacgccttcttatttaaatagcttctattgggagaacatatataa |
122 |
Q |
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| T |
26414549 |
atacaagcaaatgggtacaagagagaccaccaccaaatccctaatgaggctcaagtacgccttcttatttaaatagcttctattgggagaacatatataa |
26414648 |
T |
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| Q |
123 |
ttgtcaaatgaggcagaaaataacctatatgacattgttatatcataagtgaaacaaat |
181 |
Q |
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| T |
26414649 |
ttgtgaaatgaggcagaaaataacctatatgacattgttatat-ataagtgaaacaaat |
26414706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 175 - 360
Target Start/End: Complemental strand, 26411544 - 26411359
Alignment:
| Q |
175 |
aacaaatgctttcttattttcacttagttcaaaagttgtaaaattctgctgctaatctaggttttgcaacaaccaccaatggctcagcaagaaacatatc |
274 |
Q |
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| T |
26411544 |
aacaaatgctttcatattttcacttagttgaaaagttatacaattctgttggtaatcttggttttgcaacaaccaccaatggctcagcaagaaacatatc |
26411445 |
T |
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| Q |
275 |
atctttagagttgacaaggttgatgcttgagatagtgggaggtatactccaactgaaaccatggagtaacctagccaacagtaaaa |
360 |
Q |
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| T |
26411444 |
atctttagacttttcaagactgatgcttgatgtagtgggaggtatactccaagtgaagccatggagcaacctagccaatagtaaaa |
26411359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 26411824 - 26411671
Alignment:
| Q |
23 |
atacaagcaaatgggtacaagagagaccaccaccaaatccctaatgaggctcacgtacgccttcttatttaaatagcttctattgggagaacatatataa |
122 |
Q |
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| T |
26411824 |
atacaagcaaatgggtacaagacagaccacca---aatccctaaagagactcaagt----cttcttatttaaataacttctattgtgagaacatatataa |
26411732 |
T |
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| Q |
123 |
ttgtcaaatgaggcagaaaataacctatatgacattgttatatcataagtgaaacaaatgc |
183 |
Q |
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| T |
26411731 |
ttgtcaaatgaggtagaaaataacctatatggcattgttatatcataagtgaaataaatgc |
26411671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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