View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_14 (Length: 302)
Name: NF8671_low_14
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 37220538 - 37220827
Alignment:
| Q |
1 |
cctcttgcaatgaccatgctcctttcttcaactttatagtatcactgccattagaatttgacatgattacttacggaaggatgagaggatggaaattgtt |
100 |
Q |
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| T |
37220538 |
cctcgtgcaatgaccatgctcctttcttcaactttatagtatcactgccattagaatttgacatgattacttacggaaggatgagaggatggaaattgtt |
37220637 |
T |
|
| Q |
101 |
ctatttataataggatttataaagtagttagaggtaaatacggagagtttttgttacttcacttnnnnnnnnntattgttgttacaatatactactagct |
200 |
Q |
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| T |
37220638 |
gtatttataataggatttataaagtagttagaggtaaatacggagagtttttgtaacttcacttaaaaaaatatattgttgttacaatatactactagct |
37220737 |
T |
|
| Q |
201 |
gaatatcaaagatctaaaagataaagttgcaaccagctgaatatatcaaagatttaaaagataaagttcaatttgttcgcctttcatctc |
290 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37220738 |
gaatatcaaagatctaaaagataaagttgaaaccagctgaatatatcaaagatttaaaagataaagttcaatttgttcgcctttcatctc |
37220827 |
T |
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