View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_18 (Length: 253)
Name: NF8671_low_18
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 25125450 - 25125233
Alignment:
| Q |
18 |
gttataactagccaagctttcaactggctccacgccataaagctgcataatataaaaattgaaataaaacgagaaattaggaggaaagaggagaggataa |
117 |
Q |
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| T |
25125450 |
gttataactagccaggctttcaactggctccacgccataaagctgcataatataaaaattgaaataaaacgagaaattaggaggaaagaggagaggataa |
25125351 |
T |
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| Q |
118 |
cttatcatttagttttgctgtttgattttgtagaatgtctaaagaaagattataagatagcttggatggtattatgagagttacacaaaaagcagtatga |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
25125350 |
cttatcatttagttttactgtttgattttgtagaatgtctaaagaaagattataagatagcttcgatggtattatgagagttacacaaaa---agtatga |
25125254 |
T |
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| Q |
218 |
ttgggaatcttataatttcat |
238 |
Q |
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||||||||||||| ||||||| |
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| T |
25125253 |
ttgggaatcttatgatttcat |
25125233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 46936858 - 46936943
Alignment:
| Q |
34 |
ctttcaactggctccacgccataaagctgcataatataaaaattgaaataaaacgagaaattaggaggaaagaggagaggataact |
119 |
Q |
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||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
46936858 |
ctttcgactggctccaccccatacagctgcataatataaaaattgaaacaaaacgataaattaggaggaaagaggagaggataact |
46936943 |
T |
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