View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8671_low_2 (Length: 701)

Name: NF8671_low_2
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8671_low_2
NF8671_low_2
[»] chr2 (3 HSPs)
chr2 (16-696)||(510109-510790)
chr2 (636-696)||(499459-499519)
chr2 (191-304)||(39501837-39501950)
[»] chr7 (2 HSPs)
chr7 (157-304)||(5782589-5782736)
chr7 (251-304)||(34959265-34959318)
[»] chr4 (4 HSPs)
chr4 (157-304)||(4429431-4429578)
chr4 (157-304)||(33799825-33799972)
chr4 (68-142)||(10069247-10069321)
chr4 (308-363)||(10069166-10069221)
[»] chr3 (3 HSPs)
chr3 (157-304)||(51281246-51281393)
chr3 (191-304)||(47174331-47174444)
chr3 (191-304)||(9284636-9284750)
[»] chr8 (1 HSPs)
chr8 (157-304)||(34927916-34928063)
[»] chr5 (2 HSPs)
chr5 (191-304)||(9247911-9248024)
chr5 (191-304)||(36603463-36603576)
[»] chr1 (1 HSPs)
chr1 (191-304)||(48713801-48713914)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 696
Target Start/End: Complemental strand, 510790 - 510109
Alignment:
Q  16 caaaagaaagtaaattttatcnnnnnnnggataatgtacacaattaaatgatgtggttgcatcattcaaagtagcaattataatgaaacaaaaacttttt 115  Q
    |||||||||||||||||||||       ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  510790 caaaagaaagtaaattttatcaaaaaa-ggataatgtaca--attaaatgatgtggttgtatcattcaaagtagcaattataatgaaacaaaaacttttt 510694  T
Q  116 cgaaagttacatttttatatttcgatctaatatgtccgagcgtttgtcccagcttatttcagacttatccacacaataaaaggggaagttcggccaaaca 215  Q
    | ||||||||||||||||||||||||||       || ||||||||| |||||||||||||||||| | |||||||||||||  ||||||||||||||||    
T  510693 caaaagttacatttttatatttcgatct-------ccaagcgtttgttccagcttatttcagactttttcacacaataaaagaagaagttcggccaaaca 510601  T
Q  216 catttcttgataaacacttaatataaaaagtcacatatttttcttgcgt-aaaatacacaaataaagaagttttgttaaagccgttgaaaaagtat---- 310  Q
    ||||| ||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||| |||||||||||        
T  510600 cattttttgataagcatttaatataaaaagtcacttatttttcttgtgttaaaatacacaaataaagaagttttgttaaaaccgatgaaaaagtatctct 510501  T
Q  311 --atatttttcaagattttgtaatagttaatgatgttgacattgcaattaaataaaacgttttgttttctattgttaatttaatgtttctagtgttccat 408  Q
      |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  510500 gtatatttttcaagattttgtaatagttaatgatgttgacattgcaattagataaaacgttttgttttctgttgttaatttaatgtttttagtgttccat 510401  T
Q  409 gagtttaactgagttgatgtgggacaatgtataatataatatcggcaagagcggggttcgaaccatcacacccgatttattcacgcgatgaatttgtagc 508  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  510400 gagttcaactgagttgatgtgggacaatgtataatataatatcggcaagagcggggttcgaaccaccacaccagatttattcacgctatgaatttgtagc 510301  T
Q  509 acaagactacttnnnnnnnnnnnnnnnnnnntta-aggtttacgtgatatagtttcatttcaataagcttcccaaaacccttgactctctaaaaccctac 607  Q
    | ||||||||||                     | ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  510300 agaagactacttaaaaaaaaaaaaaaaaaaaaaaaaggttcacgtgatatagtttcatttcaataagcttcccaaaaccctaaactctctaaaaccctac 510201  T
Q  608 ---tatctccaatcaccatggcgtcatcccaaattctcatccgccgtagcatgagatcactctccagcctccaccactccttctctgctact 696  Q
       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  510200 tattatctccaatcaccatggcgtcatcgcaaattctcatccgccgtagcatgagatcactctccggcctccaccactccttctcagctact 510109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 636 - 696
Target Start/End: Complemental strand, 499519 - 499459
Alignment:
Q  636 aattctcatccgccgtagcatgagatcactctccagcctccaccactccttctctgctact 696  Q
    ||||||| ||||||||||| |||||||||||||| || |||||||||||||||| ||||||    
T  499519 aattctcctccgccgtagcctgagatcactctccggcatccaccactccttctcagctact 499459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 39501837 - 39501950
Alignment:
Q  191 ataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttttcttgcgtaaaatacacaaataaagaagttttgt 290  Q
    |||||||  |||||| || |||||| ||||||||| || ||||| |||||||||||  | |||||||  || ||||||||||||||||||  | ||||||    
T  39501837 ataaaagaagaagttgggtcaaacatatttcttgagaagcacttgatataaaaagttgcttattttttgtgtgtaaaatacacaaataaatgacttttgt 39501936  T
Q  291 taaagccgttgaaa 304  Q
    |||||  |||||||    
T  39501937 taaagttgttgaaa 39501950  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 304
Target Start/End: Complemental strand, 5782736 - 5782589
Alignment:
Q  157 gtttgtcccagcttatttcagacttatccacacaataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttt 256  Q
    ||||| ||| ||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||  | ||||||    
T  5782736 gtttggcccggcttatttctgacttttctacacaataaaaggagaagttgggccaaacacatttcttgagaagcacttaatataaaaagttgcttatttt 5782637  T
Q  257 tcttgcgtaaaatacacaaataaagaagttttgttaaagccgttgaaa 304  Q
    | | | ||||||||||||||||||| ||||||| |||||  |||||||    
T  5782636 tatagtgtaaaatacacaaataaagtagttttgctaaagttgttgaaa 5782589  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 34959265 - 34959318
Alignment:
Q  251 tatttttcttgcgtaaaatacacaaataaagaagttttgttaaagccgttgaaa 304  Q
    ||||||||| | ||||||||||||||||||| ||||||| |||||  |||||||    
T  34959265 tatttttctagtgtaaaatacacaaataaagtagttttgctaaagttgttgaaa 34959318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 304
Target Start/End: Complemental strand, 4429578 - 4429431
Alignment:
Q  157 gtttgtcccagcttatttcagacttatccacacaataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttt 256  Q
    ||||| ||| ||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||  | ||||||    
T  4429578 gtttggcccggcttatttctgacttttctacacaataaaaggagaagttgggccaaacacatttcttgagaagcacttaatataaaaagttgcttatttt 4429479  T
Q  257 tcttgcgtaaaatacacaaataaagaagttttgttaaagccgttgaaa 304  Q
    | | | ||||||||||||||||||| ||||||| |||||  |||||||    
T  4429478 tatagtgtaaaatacacaaataaagtagttttgctaaagttgttgaaa 4429431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 304
Target Start/End: Original strand, 33799825 - 33799972
Alignment:
Q  157 gtttgtcccagcttatttcagacttatccacacaataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttt 256  Q
    ||||| ||||||||||||| ||||| || ||||||||||||| |||||| | ||||||||||||||||| || |||||||||||||||||  | ||||||    
T  33799825 gtttggcccagcttatttctgacttttctacacaataaaaggagaagttggaccaaacacatttcttgagaagcacttaatataaaaagttgcttatttt 33799924  T
Q  257 tcttgcgtaaaatacacaaataaagaagttttgttaaagccgttgaaa 304  Q
    | | | ||||||||||||||||||| ||||||| |||||  |||||||    
T  33799925 tatagtgtaaaatacacaaataaagtagttttgctaaagttgttgaaa 33799972  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 10069321 - 10069247
Alignment:
Q  68 gtggttgcatcattcaaagtagcaattataatgaaacaaaaactttttcgaaagttacatttttatatttcgatc 142  Q
    ||||||| |||||||||| |||||||||||||  |||||||||||||||  ||| || |||||||||||||||||    
T  10069321 gtggttgtatcattcaaattagcaattataatagaacaaaaactttttcagaagctaaatttttatatttcgatc 10069247  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 10069221 - 10069166
Alignment:
Q  308 tatatatttttcaagattttgtaatagttaatgatgttgacattgcaattaaataa 363  Q
    |||||||||||||| ||||||||||| | ||||| |||||||||||| ||| ||||    
T  10069221 tatatatttttcaaaattttgtaataataaatgacgttgacattgcatttagataa 10069166  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 304
Target Start/End: Complemental strand, 51281393 - 51281246
Alignment:
Q  157 gtttgtcccagcttatttcagacttatccacacaataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttt 256  Q
    ||||| ||| ||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||  | ||||||    
T  51281393 gtttggcccggcttatttctgacttttctacacaataaaaggagaagttgggccaaacacatttcttgagaagcacttaatataaaaagttgcttatttt 51281294  T
Q  257 tcttgcgtaaaatacacaaataaagaagttttgttaaagccgttgaaa 304  Q
    | | | ||||||||||||||||||| ||||||| |||||  |||||||    
T  51281293 tatagtgtaaaatacacaaataaagtagttttgctaaagttgttgaaa 51281246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 47174444 - 47174331
Alignment:
Q  191 ataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttttcttgcgtaaaatacacaaataaagaagttttgt 290  Q
    |||||||| ||||||  |||||||| ||||||||| | ||||||||||||||||||  | |||||||  || |||||||||||||||||| || ||||||    
T  47174444 ataaaaggagaagttgagccaaacatatttcttgagagacacttaatataaaaagttgcttattttttgtgtgtaaaatacacaaataaataacttttgt 47174345  T
Q  291 taaagccgttgaaa 304  Q
    |||||  |||||||    
T  47174344 taaagttgttgaaa 47174331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 9284750 - 9284636
Alignment:
Q  191 ataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttttct-tgcgtaaaatacacaaataaagaagttttg 289  Q
    |||||||| ||||||  |||||||| ||||||||| || |||||||||||||||||  | ||||||| | || ||||||||||||||||||  | |||||    
T  9284750 ataaaaggagaagttgagccaaacatatttcttgagaagcacttaatataaaaagttgcttatttttttgtgtgtaaaatacacaaataaatgacttttg 9284651  T
Q  290 ttaaagccgttgaaa 304  Q
    ||||||  |||||||    
T  9284650 ttaaagttgttgaaa 9284636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 157 - 304
Target Start/End: Original strand, 34927916 - 34928063
Alignment:
Q  157 gtttgtcccagcttatttcagacttatccacacaataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttt 256  Q
    ||||| ||| ||||||||| ||||| || ||||||||||||| |||||| ||||||||||||||||||| || ||||||||||| |||||  | ||||||    
T  34927916 gtttggcccggcttatttctgacttttctacacaataaaaggagaagttgggccaaacacatttcttgagaagcacttaatatataaagttgcttatttt 34928015  T
Q  257 tcttgcgtaaaatacacaaataaagaagttttgttaaagccgttgaaa 304  Q
    | | | ||||||||||||||||||| ||||||| |||||  |||||||    
T  34928016 tatagtgtaaaatacacaaataaagtagttttgctaaagttgttgaaa 34928063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 9247911 - 9248024
Alignment:
Q  191 ataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttttcttgcgtaaaatacacaaataaagaagttttgt 290  Q
    |||||||| |||||| ||||||||| ||||||||| || |||||||||||||||||  | |||||||  || ||||||||||||||||||  | ||||||    
T  9247911 ataaaaggagaagttgggccaaacatatttcttgagaagcacttaatataaaaagttgcttattttttgtgtgtaaaatacacaaataaatgacttttgt 9248010  T
Q  291 taaagccgttgaaa 304  Q
    |||||  |||||||    
T  9248011 taaagttgttgaaa 9248024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 36603576 - 36603463
Alignment:
Q  191 ataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttttcttgcgtaaaatacacaaataaagaagttttgt 290  Q
    |||||||| |||||| ||||||||| ||||||||| || |||||| ||||||||||  | |||||||  || |||||||||||||||||| || ||||||    
T  36603576 ataaaaggagaagttgggccaaacatatttcttgagaagcacttagtataaaaagttgcttattttttgtgtgtaaaatacacaaataaataacttttgt 36603477  T
Q  291 taaagccgttgaaa 304  Q
    |||||  |||||||    
T  36603476 taaagttgttgaaa 36603463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 48713801 - 48713914
Alignment:
Q  191 ataaaaggggaagttcggccaaacacatttcttgataaacacttaatataaaaagtcacatatttttcttgcgtaaaatacacaaataaagaagttttgt 290  Q
    |||||||| |||||| ||||||||| ||||||||| || |||||||||||||||||  | |||||||  || ||||||||||||||||||  | ||||||    
T  48713801 ataaaaggagaagttgggccaaacatatttcttgagaagcacttaatataaaaagttgcttattttttatgtgtaaaatacacaaataaatgacttttgt 48713900  T
Q  291 taaagccgttgaaa 304  Q
    |||||  |||||||    
T  48713901 taaagttgttgaaa 48713914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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