View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_20 (Length: 245)
Name: NF8671_low_20
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 36642891 - 36643119
Alignment:
| Q |
17 |
actagcaaatgcttggtttccgatcttcagctcgtacagatgatgttgatgagcgtgtttaatgtcgtcgagaatctgggtgcgttcggcatttttggct |
116 |
Q |
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| T |
36642891 |
actagcaaatgcttggtttccgatcttcagctcgtacagatgatgttgatgagcgtgtttaatgtcgtcgagaatctgggtgccttcggcattttcggct |
36642990 |
T |
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| Q |
117 |
tacctagtggaaatgtgaaaactgacccctatttcaacagtaatttaagcaattgggggctcatgagcgaagaagacggtaatagtagtcttctgcacaa |
216 |
Q |
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| T |
36642991 |
tacctagtggaaatgtgaaaactgatccctatttcaacagtaatttaagcaattgggggctcaggagcgaagaagacggtaataatagtcttctgcacaa |
36643090 |
T |
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| Q |
217 |
atggaaaggattccggggtgtaccctttt |
245 |
Q |
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| T |
36643091 |
atggaaaggattccggggtgtaccctttt |
36643119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 36650677 - 36650451
Alignment:
| Q |
19 |
tagcaaatgcttggtttccgatcttcagctcgtacagatgatgttgatgagcgtgtttaatgtcgtcgagaatctgggtgcgttcggcatttttggctta |
118 |
Q |
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| T |
36650677 |
tagcaaatccttggttgctgatcttcagcttggacagatgatgttgatgagcgtgtttaatgttgttgagcatctggctgcgtttggtattcttggagtg |
36650578 |
T |
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| Q |
119 |
cctagtggaaatgtgaaaactgacccctatttcaacagtaatttaagcaattgggggctcatgagcgaagaagacggtaatagtagtcttctgcacaaat |
218 |
Q |
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| T |
36650577 |
cctagtggaagtgtgagaactgaccccttttttgacagtaatgtaaggaagtatgggctaaggtgtgaagctgaacgtgataatactgttctgcacgaat |
36650478 |
T |
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| Q |
219 |
ggaaaggattccggggtgtaccctttt |
245 |
Q |
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| T |
36650477 |
ggaaaggattcaggggtgttccctttt |
36650451 |
T |
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