View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_3 (Length: 682)
Name: NF8671_low_3
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 74 - 665
Target Start/End: Complemental strand, 19058324 - 19057733
Alignment:
| Q |
74 |
caataaatttctcaaatctaacaccaatttaaattattttgcaccttacaaaggcttttgtgaaagcatggaacgatgtatgtggtacaactcagggcac |
173 |
Q |
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| T |
19058324 |
caataaatttctcaaatctaacaccaatttaaattattttgcaccttacaaaggcttttgtgaaagcatggaacgatgtatgtggtacaactcagggcac |
19058225 |
T |
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| Q |
174 |
accaacacttataatacccgaaggcaaaacattcctgttgcaacctttgtcgtttcaaggtccatgtaaatccacaaccattcaagttggggtaatctgt |
273 |
Q |
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| T |
19058224 |
accgacacttataatacccgaaggcaaaacattcatgttgcaacctttgtcgtttcaaggtccatgtaaatccacaaccattcaagttgaggtaatctgt |
19058125 |
T |
|
| Q |
274 |
tttgaaaagaattaaagttgatctattttaaaataagtagacacttagtttttaaaaactaataaaataattttgttaaacaattgcttccgttagtata |
373 |
Q |
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| T |
19058124 |
tttgaaaagaattaaagttgatctattttaaaataagtagacacttagtttttaaaaacaaataaaataattttgttaaacaattgcttttgttagtata |
19058025 |
T |
|
| Q |
374 |
acttttaaatcataatacatgttttgatttgtatacatactacattcaaccaaatcacacaatatatgtatacataatacaaaatatatatttccttaaa |
473 |
Q |
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| T |
19058024 |
acttttaaatcataatacatgttttgatttgtatacatactacattcaaccaaatcactcaatatatgtatacataatacaaaatatatatttccttaaa |
19057925 |
T |
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| Q |
474 |
attttatgatgtcctttgatatggnnnnnnnnngttaaaacatttatcttgttaacatgaatgtttggccatccataatggtggttgtttcatctatttt |
573 |
Q |
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| T |
19057924 |
attttatgatgtcctttgatatggaaaaataaagttaaaacatatatcttgttgacaggaatgtttggccatccataatggtggttgtttcatctatttt |
19057825 |
T |
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| Q |
574 |
gtcgaattttctgtatgatatgcagttttgtacattgttaaggatactgttttttggcttgacagattaaaggaacaatcaccgctccgaaa |
665 |
Q |
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| T |
19057824 |
gtcgaattttctgtatgatatgcagttttgtacattgttaaggatactgttttttggcttgacaggttaaaggaacaatcaccgctccgaaa |
19057733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 32729499 - 32729631
Alignment:
| Q |
123 |
aaaggcttttgtgaaagcatggaacgatgtatgtggtacaactcagggcacaccaacacttataatacccgaaggcaaaacattcctgttgcaacctttg |
222 |
Q |
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| T |
32729499 |
aaaggcttttacgaatgcatggcaagatgtgtgtggttcaactcgagataccccgacacttatcatacccgaaggccaaaatttcatgttgcaacctttg |
32729598 |
T |
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| Q |
223 |
tcgtttcaaggtccatgtaaatccacaaccatt |
255 |
Q |
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| T |
32729599 |
tcatttcaaggtccttgcaaatctacaaccatt |
32729631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 123 - 252
Target Start/End: Original strand, 38089411 - 38089540
Alignment:
| Q |
123 |
aaaggcttttgtgaaagcatggaacgatgtatgtggtacaactcagggcacaccaacacttataatacccgaaggcaaaacattcctgttgcaacctttg |
222 |
Q |
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| T |
38089411 |
aaaggctttcttgaaagcatggcaagaagtatgtggttcaactcaaggtactccaacccttattataccgggaggcaaaaagtttatgttgcaaccttcg |
38089510 |
T |
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| Q |
223 |
tcgtttcaaggtccatgtaaatccacaacc |
252 |
Q |
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| T |
38089511 |
tcattccaaggtccttgcaaatcctcaacc |
38089540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 38095444 - 38095567
Alignment:
| Q |
145 |
aacgatgtatgtggtacaactcagggcacaccaacacttataatacccgaaggcaaaacattcctgttgcaacctttgtcgtttcaaggtccatgtaaat |
244 |
Q |
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||||||| ||||||||||| | || |||| ||| || | | ||||||||||| ||||||||| |||||||||||||| ||| |||||||||| |||| |
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| T |
38095444 |
aacgatgcatgtggtacaagtgagagcaccccatcaatgaccatacccgaaggaaaaacattcttgttgcaacctttggtgttcaaaggtccatgcaaat |
38095543 |
T |
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| Q |
245 |
ccacaaccattcaagttggggtaa |
268 |
Q |
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| T |
38095544 |
ctacaaacattatagttgaggtaa |
38095567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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