View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8671_low_6 (Length: 486)

Name: NF8671_low_6
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8671_low_6
NF8671_low_6
[»] chr3 (4 HSPs)
chr3 (31-222)||(7019913-7020104)
chr3 (292-467)||(7020174-7020349)
chr3 (42-79)||(24136738-24136775)
chr3 (31-79)||(41460325-41460373)
[»] chr5 (3 HSPs)
chr5 (44-79)||(13011529-13011564)
chr5 (44-79)||(13082938-13082973)
chr5 (45-77)||(10532537-10532569)
[»] chr8 (1 HSPs)
chr8 (45-79)||(25943960-25943994)
[»] chr4 (1 HSPs)
chr4 (46-80)||(29372631-29372665)
[»] chr2 (2 HSPs)
chr2 (33-79)||(23405271-23405317)
chr2 (43-79)||(19208863-19208899)
[»] chr7 (3 HSPs)
chr7 (42-79)||(8859788-8859825)
chr7 (50-79)||(12475701-12475730)
chr7 (42-79)||(21461638-21461675)
[»] chr6 (1 HSPs)
chr6 (42-79)||(15869050-15869087)
[»] chr1 (2 HSPs)
chr1 (32-77)||(8325792-8325837)
chr1 (51-79)||(12663475-12663503)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 31 - 222
Target Start/End: Original strand, 7019913 - 7020104
Alignment:
Q  31 gttcaaataagctagtggttagaaattcacctttttaaggtgaataagttagaaatttggggtttgaacccttacttatataatgcaacatcccatcaac 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  7019913 gttcaaataagctagtggttagaaattcacctttttaaggtgaataagttagaaatttggggtttgaaccattacttatataatgcaacatgccatcaac 7020012  T
Q  131 taagttattatcacaggaagaacccatgccattttattcatacattatatgannnnnnnaccaaacttttacaaatcacaacacaaacaacc 222  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  7020013 tgagttattatcacaggaagaacccatgccattttattcatacattatatgatttttttaccaaacttttacaaatcacaacacaaacaacc 7020104  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 292 - 467
Target Start/End: Original strand, 7020174 - 7020349
Alignment:
Q  292 catatattacactattttagtacaatcaattatctttttattttaaaattcttattgcgnnnnnnncttttttgagtgtaaacttcgtttacaa-agtgt 390  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||    
T  7020174 catatattacactattttagtacaatcaat-atctttttattttaaaattcttattgcgaaaaaaacttttttgagtgtaaacttcgtttacaacagtgt 7020272  T
Q  391 atgtgaattgagtgtatgcatgtgtacgtaaactcatattacatatactattgtaaactgagtttagatatactacc 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  7020273 atgtgaattgagtgtatgcatgtgtacgtaaactcatattacatatactactgtaaattgagtttatatatactacc 7020349  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 24136738 - 24136775
Alignment:
Q  42 ctagtggttagaaattcacctttttaaggtgaataagt 79  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  24136738 ctagtggctagaaattcacctttttaaagtgaataagt 24136775  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 41460325 - 41460373
Alignment:
Q  31 gttcaaataagctagtggttagaaattcacctttttaaggtgaataagt 79  Q
    |||||| ||| ||||||| ||||||||||| ||| ||||||||||||||    
T  41460325 gttcaagtaaactagtggctagaaattcacttttataaggtgaataagt 41460373  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 13011564 - 13011529
Alignment:
Q  44 agtggttagaaattcacctttttaaggtgaataagt 79  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13011564 agtggttagaaattctcctttttaaggtgaataagt 13011529  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 13082973 - 13082938
Alignment:
Q  44 agtggttagaaattcacctttttaaggtgaataagt 79  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13082973 agtggttagaaattctcctttttaaggtgaataagt 13082938  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 10532569 - 10532537
Alignment:
Q  45 gtggttagaaattcacctttttaaggtgaataa 77  Q
    |||||||||||||||||||||||| ||||||||    
T  10532569 gtggttagaaattcacctttttaaagtgaataa 10532537  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Original strand, 25943960 - 25943994
Alignment:
Q  45 gtggttagaaattcacctttttaaggtgaataagt 79  Q
    |||||| ||||||||||||||||||||||||||||    
T  25943960 gtggtttgaaattcacctttttaaggtgaataagt 25943994  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 29372665 - 29372631
Alignment:
Q  46 tggttagaaattcacctttttaaggtgaataagtt 80  Q
    |||||||||||| ||||||||||||||||||||||    
T  29372665 tggttagaaatttacctttttaaggtgaataagtt 29372631  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 23405317 - 23405271
Alignment:
Q  33 tcaaataagctagtggttagaaattcacctttttaaggtgaataagt 79  Q
    |||||||  ||| ||| ||||||||||||||||||||||||||||||    
T  23405317 tcaaatatcctaatggctagaaattcacctttttaaggtgaataagt 23405271  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 19208863 - 19208899
Alignment:
Q  43 tagtggttagaaattcacctttttaaggtgaataagt 79  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  19208863 tagtggttagaaattcacatttttaaagtgaataagt 19208899  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 8859825 - 8859788
Alignment:
Q  42 ctagtggttagaaattcacctttttaaggtgaataagt 79  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  8859825 ctagtggctagaaattcaccattttaaggtgaataagt 8859788  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 12475730 - 12475701
Alignment:
Q  50 tagaaattcacctttttaaggtgaataagt 79  Q
    ||||||||||||||||||||||||||||||    
T  12475730 tagaaattcacctttttaaggtgaataagt 12475701  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 21461638 - 21461675
Alignment:
Q  42 ctagtggttagaaattcacctttttaaggtgaataagt 79  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  21461638 ctagtggttataaattcacctttttaaagtgaataagt 21461675  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 15869050 - 15869087
Alignment:
Q  42 ctagtggttagaaattcacctttttaaggtgaataagt 79  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  15869050 ctagtggctagaaactcacctttttaaggtgaataagt 15869087  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 8325837 - 8325792
Alignment:
Q  32 ttcaaataagctagtggttagaaattcacctttttaaggtgaataa 77  Q
    ||||| |||| |||||||||||||| ||||||||||| ||||||||    
T  8325837 ttcaagtaaggtagtggttagaaatacacctttttaaagtgaataa 8325792  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 79
Target Start/End: Original strand, 12663475 - 12663503
Alignment:
Q  51 agaaattcacctttttaaggtgaataagt 79  Q
    |||||||||||||||||||||||||||||    
T  12663475 agaaattcacctttttaaggtgaataagt 12663503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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