View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_7 (Length: 453)
Name: NF8671_low_7
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 14587886 - 14587524
Alignment:
| Q |
18 |
tatgttaagtggaaatggaagccaaatggttgtgatattccaaggtatgtataatgattttgatatgcatgattgattaatgnnnnnnnnnnnn-gttgc |
116 |
Q |
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| T |
14587886 |
tatgttaagtggaaatggaagccaaatggttgtgatattccaaggtatgtataatgattttgatatgcatgattgattaatgtttttatttttttgttgc |
14587787 |
T |
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| Q |
117 |
aaagttagtaattttaatgttgttactttaggnnnnnnnnnttaacagtagaatagcaagttgcgtagattctgtatgattaaaatagtaaattaagaga |
216 |
Q |
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| T |
14587786 |
aaagttagtaattttaatgttgttaatttaggaaaaaaaaaataacagtagaatagcaagttgtgcagattctgtataattaaaatagttaattaagaga |
14587687 |
T |
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| Q |
217 |
aaaatggaaatattgttactttagaaaatgctttatagtttaggaaacaaaggtatataataggaagacaaagagaatagttctaaattgcaatagtgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14587686 |
aaaatggaaatattgttactttagaaaatgctttatagtttaggaaacaaaggtatataataggaagacaaagagaatagttctaaattgcaatagttaa |
14587587 |
T |
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| Q |
317 |
agttttagaggtctctgcaatagcaatgaccgcaactgtggctagaacccgactttagaatca |
379 |
Q |
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|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
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| T |
14587586 |
agttttagaggtctctgcaacagcaatgaccgcaacagcggctagaacccgactttagaatca |
14587524 |
T |
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