View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_8 (Length: 445)
Name: NF8671_low_8
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 4723880 - 4724014
Alignment:
| Q |
19 |
tatttattatcaaggttcacatcaatagtccaatttaaacaaatctcaatagttcatatatgtgaaacggtgataacgagccagattcacacaatagaga |
118 |
Q |
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| T |
4723880 |
tatttattatcaaggttcacatcaatagtccaatttaaacaaatctcaatagttcatatatgtgaaaccgtgataacgagccagattcacacaatagaga |
4723979 |
T |
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| Q |
119 |
atcaaccacataatacattcaagtagggttcatgt |
153 |
Q |
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| T |
4723980 |
atcaaccacataatacattcaagtagggttcatgt |
4724014 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 313 - 407
Target Start/End: Original strand, 4724143 - 4724237
Alignment:
| Q |
313 |
tcgtcaaagtcattttattttatcaggtgcatagacatatcaaataaggtgcagtataaaattagttcgcatgtacgtcaaacacaatgaagtat |
407 |
Q |
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| T |
4724143 |
tcgtcaaagtcatattattttatcaggtgcatagacatatcaaataaggtgcagtacaaaattagttcgcatgtacgtcaaacacaatgaagtat |
4724237 |
T |
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