View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8671_low_9 (Length: 427)
Name: NF8671_low_9
Description: NF8671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8671_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 3446385 - 3445974
Alignment:
| Q |
15 |
agaaataatatggagtaagtaagaacaaaataaaacaatgatagagtcnnnnnnntgaaatagaattgatctatgtggttgcaatatccaaaattttcga |
114 |
Q |
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| T |
3446385 |
agaaataatatggagtaagtaagaacaaaataaaacaatgatagaatcaaaaaa-tgaaatagaattgatctatgtggttgcaatatccaaaattttcga |
3446287 |
T |
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| Q |
115 |
caattttcttggttatatttttacacgacagaacattgacatcaaatgattcaaacatatggctatacatgatccagtggcacccacaagcttcatatgt |
214 |
Q |
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| T |
3446286 |
caattttcttggttttatttttacacgacagaacattgacatcaaatgattcaaacatatggctatacatgatccagtggcacccacaagcttcatatgt |
3446187 |
T |
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| Q |
215 |
agataagttgatatgtcaattttgtaacttattatgcagttatgtttgttcccaaccatacccagaatatacaaaagcactgttcatgtcattgtattgg |
314 |
Q |
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| T |
3446186 |
agataagttgatatgtcaattttgtaacttattatgcagttatgtttgttcccaaccatacccagaatatacaaaagcactgttcatgtcattgtattgg |
3446087 |
T |
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| Q |
315 |
taggtgggtgaacaaattatgttttgaagcatcaaattgatttgacatcatgggaaactatagatattctttgctggctagacacagttttaatgtcata |
414 |
Q |
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| T |
3446086 |
taggtgggtgaacaaaatatgttttgaagcatcaaattgatttgacatcatgggaaactatagatattcttcgctggctagacacagttttaatgtcata |
3445987 |
T |
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| Q |
415 |
atcacaagtgatc |
427 |
Q |
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| T |
3445986 |
atcacaagtgatc |
3445974 |
T |
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