View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8672_high_10 (Length: 402)

Name: NF8672_high_10
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8672_high_10
NF8672_high_10
[»] chr7 (26 HSPs)
chr7 (19-402)||(8609619-8610002)
chr7 (97-378)||(8570037-8570318)
chr7 (46-354)||(8382986-8383294)
chr7 (97-355)||(8576075-8576333)
chr7 (97-355)||(8545382-8545640)
chr7 (23-354)||(8601724-8602055)
chr7 (76-377)||(8590365-8590666)
chr7 (95-355)||(8581449-8581709)
chr7 (91-354)||(8537786-8538049)
chr7 (104-262)||(29577840-29577998)
chr7 (77-377)||(7877874-7878174)
chr7 (112-402)||(29582017-29582307)
chr7 (188-359)||(17267684-17267855)
chr7 (160-262)||(8559170-8559272)
chr7 (208-363)||(27831147-27831302)
chr7 (97-240)||(8667283-8667426)
chr7 (190-347)||(8636597-8636754)
chr7 (186-263)||(8664901-8664978)
chr7 (310-359)||(17259986-17260035)
chr7 (20-122)||(8017497-8017599)
chr7 (73-119)||(39985631-39985677)
chr7 (97-137)||(1301427-1301467)
chr7 (20-60)||(8545677-8545717)
chr7 (97-133)||(8654421-8654457)
chr7 (97-137)||(8659330-8659370)
chr7 (97-133)||(10494535-10494571)
[»] chr8 (2 HSPs)
chr8 (118-363)||(12528245-12528490)
chr8 (265-353)||(43744567-43744655)
[»] chr4 (6 HSPs)
chr4 (271-378)||(35132182-35132290)
chr4 (187-354)||(30775002-30775169)
chr4 (283-335)||(23596932-23596984)
chr4 (67-140)||(23596716-23596789)
chr4 (97-133)||(9336052-9336088)
chr4 (283-335)||(23588080-23588132)
[»] chr2 (9 HSPs)
chr2 (260-363)||(12258905-12259008)
chr2 (265-347)||(7541983-7542065)
chr2 (20-125)||(17666767-17666872)
chr2 (265-353)||(14703159-14703247)
chr2 (97-140)||(7542190-7542233)
chr2 (97-144)||(11999367-11999414)
chr2 (91-125)||(17716842-17716876)
chr2 (76-137)||(16657657-16657718)
chr2 (73-121)||(17622082-17622130)
[»] chr5 (1 HSPs)
chr5 (187-225)||(28219797-28219835)
[»] chr1 (1 HSPs)
chr1 (193-285)||(4678814-4678906)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 8610002 - 8609619
Alignment:
Q  19 cacagaatggttaatcactttgtgaaggagttcaaaaggaagcattcaaaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8610002 cacagaatggttaatcactttgtgaaggagttcaaaaggaagcattcaaaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtg 8609903  T
Q  119 agagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgatttttgttcatcaattactcgtgctaa 218  Q
    |||||||||| ||||||||||||||||| || || ||||  |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| ||    
T  8609902 agagggcaaagaggacactttcatttgacacggaggccacaattgatattgatgctatatctgagggtattgatttttgttcatcaatcactcgtgcgaa 8609803  T
Q  219 gtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgtt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||    
T  8609802 gtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagatgtcttactgatgctgaaatggataagaaaaccgtagatgatgtt 8609703  T
Q  319 gttcttgttggcggatcttcgaggattccgaaagtgaagcagctacttcaagactttttcgacggaaaggatctgtgtatgagc 402  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||| | ||||||||| |||||||||||    
T  8609702 gttcttgttggaggttcttctaggattccgaaagtgaagcagctactgcaagactttttcaatggaaaggatttgtgtatgagc 8609619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 97 - 378
Target Start/End: Complemental strand, 8570318 - 8570037
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgattttt 196  Q
    |||||||| || || ||||||||||||||||||||||||||||||| ||||||||| ||||  |||||  | |||||||||| | | || ||||| ||      
T  8570318 aggaggttaagaacagcttgtgagagggcaaaaaggacactttcatatgatactgaggccacaattgagctagatgctatatataagggaattgacttca 8570219  T
Q  197 gttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatgga 296  Q
    |||||||||| || || || ||||||||| || | || ||| |||||||||||||||||||||| || ||| | ||||||||| |||||||||| |||||    
T  8570218 gttcatcaataacccgggccaagtttgaggaaatgaatatgaacctctttgaaaagtgtatggaaactgttaatagttgtcttgctgatgctaagatgga 8570119  T
Q  297 taagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagcagctacttcaagactttttc 378  Q
     ||||| | ||||||||||||||| |||||||| || ||||| |||||||| ||||||| ||||||| | ||||| ||||||    
T  8570118 aaagaatagtgtagatgatgttgtccttgttggtggttcttctaggattcctaaagtgaggcagctattacaagagtttttc 8570037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 46 - 354
Target Start/End: Original strand, 8382986 - 8383294
Alignment:
Q  46 gagttcaaaaggaagcattcaaaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttg 145  Q
    |||||||| |||||||||   || || || ||||||||| | | ||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||    
T  8382986 gagttcaagaggaagcataataaggacattagtgggaacccaaaggctcttagaaggttaagaacggcttgcgagagggcaaaaaggacactttcatttg 8383085  T
Q  146 atactgatgccatgattgatatcgatgctatatctgatggtattgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctt 245  Q
    ||| ||| |||  |||||| || |||||| | | ||| ||||||||||||  ||| ||| | ||||| || || ||||||||||| || |||||||| ||    
T  8383086 atattgaggccgcgattgacatagatgctctgtatgagggtattgattttaattcttcagtcactcgggccaaatttgagcaactcaatatggacctatt 8383185  T
Q  246 tgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggatt 345  Q
    |||||||||||||||||| ||||| || ||||||||||||||||| ||| | ||||  | ||||||||||||||||||  | || || ||||||||||||    
T  8383186 tgaaaagtgtatggagactgttgagagctgtcttactgatgctaagatgaacaagagtagtgtagatgatgttgttctcatcggtggttcttcgaggatt 8383285  T
Q  346 ccgaaagtg 354  Q
    || ||||||    
T  8383286 cccaaagtg 8383294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 8576333 - 8576075
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgattttt 196  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||| ||| ||||||||||  |||||  | |||||||||| | | |||||||| || |    
T  8576333 aggaggttgagaactgcttgtgaaaaggcaaaaaggacactttcatatgacactgatgccacaattgaactagatgctatatataaaggtattgacttct 8576234  T
Q  197 gttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatgga 296  Q
    |||| ||||| || || || ||||||||| || | || ||| |||||||||||||||||||| | || ||| | | ||||||| |||||||||| |||||    
T  8576233 gttcctcaataacccgggccaagtttgaggaaatgaatatgaacctctttgaaaagtgtatgaatactgttaatatttgtcttgctgatgctaagatgga 8576134  T
Q  297 taagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtga 355  Q
     ||||| | ||||||||||||||| |||||||| || ||||| |||||||| |||||||    
T  8576133 caagaatagtgtagatgatgttgtccttgttggtggttcttctaggattcctaaagtga 8576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 97 - 355
Target Start/End: Complemental strand, 8545640 - 8545382
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgattttt 196  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||  || ||||| ||||  |||||  | |||||| ||| | | |||||||| ||||    
T  8545640 aggaggttgagaactgcctgtgagaaggcaaaaaggacactttcatacgacactgaggccacaattgacctagatgctttatatcaaggtattgactttt 8545541  T
Q  197 gttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatgga 296  Q
    ||||||  || ||||| || |||||||||||| | || |||||||||||||||||||||||||| || ||| |  ||||||||  ||||||||| |||||    
T  8545540 gttcatgcatcactcgggccaagtttgagcaattgaatatggacctctttgaaaagtgtatggacactgttaattgttgtcttgttgatgctaagatgga 8545441  T
Q  297 taagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtga 355  Q
     |||   | ||||||||||||||| ||||||||||| ||||| |||||||| |||||||    
T  8545440 caagggtagtgtagatgatgttgtccttgttggcggttcttctaggattcctaaagtga 8545382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 23 - 354
Target Start/End: Complemental strand, 8602055 - 8601724
Alignment:
Q  23 gaatggttaatcactttgtgaaggagttcaaaaggaagcattcaaaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtgagag 122  Q
    ||||||| || |||||||| | ||||||||| |||||| ||   || || || ||||||| | ||||||  ||||| ||||| || || || || |||||    
T  8602055 gaatggtgaaccactttgttatggagttcaacaggaagtatatgaaggacattagtgggagcccgagggtgcttagaaggttaagaacggcctgcgagag 8601956  T
Q  123 ggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgatttttgttcatcaattactcgtgctaagttt 222  Q
    | |||||||||||||||||||||||||  |||| |  ||||| || ||| |  ||| ||| |||||||||||   ||||||||| ||||| || ||||||    
T  8601955 gacaaaaaggacactttcatttgataccaatgcgacaattgacatagattccttatttgagggtattgatttccattcatcaatcactcgggccaagttt 8601856  T
Q  223 gagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgttgttc 322  Q
    |||||||| ||  ||||||||||| | |||||||| ||||| |||||||||||||||| ||||||| | || || ||||  | ||| ||||||| ||| |    
T  8601855 gagcaactcaatgtggacctctttaagaagtgtatagagactgttgaaagttgtcttagtgatgctcagatcgaaaagagtagtgtggatgatgctgtcc 8601756  T
Q  323 ttgttggcggatcttcgaggattccgaaagtg 354  Q
    |||||||||| ||||| |||||||| ||||||    
T  8601755 ttgttggcggttcttctaggattcccaaagtg 8601724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 377
Target Start/End: Complemental strand, 8590666 - 8590365
Alignment:
Q  76 agtgggaactcgagggctcttaggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgcta 175  Q
    ||||||||| | |||||||||||||||||||  || |||||||||||||| ||||||||||| |||| ||||||||| || |  || |  || |||||||    
T  8590666 agtgggaacgcaagggctcttaggaggttgaaaacagcttgtgagagggctaaaaggacactgtcatatgatactgaggcaacaatcggcatagatgcta 8590567  T
Q  176 tatctgatggtattgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttg 275  Q
    ||| ||| ||  |||| ||   || || | | ||||| || |||||||| |||||||||| ||| ||||||||||||||| ||||||  ||  | | |||    
T  8590566 tatatgagggagttgacttccatttattagtcactcgggccaagtttgaacaacttaacagggatctctttgaaaagtgtttggagattgtcaagaattg 8590467  T
Q  276 tcttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagcagctacttcaagacttt 375  Q
    | |  || ||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||||| |||||||| |||||| |||||||| | |||||||||    
T  8590466 tttggctaatgctaagatggacaagaacattgtagatgatgttgtacttgttggtggttcttctaggattcccaaagtgcagcagctattgcaagacttt 8590367  T
Q  376 tt 377  Q
    ||    
T  8590366 tt 8590365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 95 - 355
Target Start/End: Complemental strand, 8581709 - 8581449
Alignment:
Q  95 ttaggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgattt 194  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||| ||| ||||| ||||  |||||  | ||| |||||  | | |||||||| ||    
T  8581709 ttagaaggttgaggactgcttgtgagagagcgaaaaggacactttcatatgacactgaggccacaattgacctagattctatacatcaaggtattgactt 8581610  T
Q  195 ttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatg 294  Q
     | ||| ||||| ||||| || |||||||||||| | || ||| |||||||||||||||||||||| || ||| | ||||||||| | |||||||| |||    
T  8581609 ctattcgtcaataactcgggccaagtttgagcaaatgaatatgaacctctttgaaaagtgtatggacactgttaatagttgtcttgccgatgctaagatg 8581510  T
Q  295 gataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtga 355  Q
    || | |   | ||||||||||||||| |||||||| || ||||| |||||||| |||||||    
T  8581509 gacaggggtagtgtagatgatgttgtccttgttggtggttcttctaggattcctaaagtga 8581449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 354
Target Start/End: Complemental strand, 8538049 - 8537786
Alignment:
Q  91 gctcttaggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattg 190  Q
    ||||| |||| |||||| ||||| || ||||||||||||||| | ||||| |  || ||||| ||||  |||||||| |||||||||| | | ||| |||    
T  8538049 gctctgaggaagttgagaactgcatgcgagagggcaaaaaggtcgctttcttacgacactgaagccacaattgatatagatgctatatgtcagggtgttg 8537950  T
Q  191 atttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaa 290  Q
    |||| ||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||| | || ||| | |||||| ||| |||||||||    
T  8537949 atttctgttcatcaatcactcgggccaagtttgagcaactcaacatggacctctttgaaaagtgtatgaaaactgttaagagttgttttaatgatgctaa 8537850  T
Q  291 aatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtg 354  Q
     ||||| |  |  | | | ||||||||||| || ||||| || ||||| |||||||| ||||||    
T  8537849 gatggacagtagtagtatggatgatgttgtactagttggtggctcttctaggattcccaaagtg 8537786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 29577840 - 29577998
Alignment:
Q  104 tgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgatttttgttcatc 203  Q
    |||| |||||||||||||||||||| ||| ||||||||| ||| | ||| ||||  ||||| || |||||||||| | | |||||||| || || |||||    
T  29577840 tgagaactgcttgtgagagggcaaagagggcactttcatatgacattgaggccacaattgacatagatgctatatgtcagggtattgacttctgctcatc 29577939  T
Q  204 aattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggaga 262  Q
    ||||||||| || || ||||||| ||| |||||||||||||||||||| ||||||||||    
T  29577940 aattactcgggcgaaatttgagcgactcaacatggacctctttgaaaaatgtatggaga 29577998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 377
Target Start/End: Original strand, 7877874 - 7878174
Alignment:
Q  77 gtgggaactcgagggctcttaggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctat 176  Q
    |||| ||| ||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||  | |  ||||| || ||||||||    
T  7877874 gtggaaacccgagggcccttaggaggttgagaactgcatgtgagagggctaaaaggacactgtcatttgatactgagactacaattgacatagatgctat 7877973  T
Q  177 atctgatggtattgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgt 276  Q
    |   || || ||||| ||   |   | | | | ||| || |||||||||||||| || ||||| || |||||||| ||| ||| ||  ||  | ||||||    
T  7877974 acacgacggaattgacttcaatatgttattaagtcgggccaagtttgagcaactcaatatggatctttttgaaaattgtttggcgattgtcaagagttgt 7878073  T
Q  277 cttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagcagctacttcaagactttt 376  Q
    |||||||||||||  ||||| ||||| | ||||||||||||||| |||||||| ||||| || |||||||  |||||| |||||||| | || |||||||    
T  7878074 cttactgatgctatgatggacaagaacaatgtagatgatgttgtacttgttggtggatcatctaggattctcaaagtgcagcagctattgcaggactttt 7878173  T
Q  377 t 377  Q
    |    
T  7878174 t 7878174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 112 - 402
Target Start/End: Original strand, 29582017 - 29582307
Alignment:
Q  112 gcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgatttttgttcatcaattactc 211  Q
    ||||||||||||||||| ||||||||||||||||| | |||  |||  |||||  | ||||| || | | | ||||||||||| || ||| || ||||||    
T  29582017 gcttgtgagagggcaaagaggacactttcatttgacattgagaccacaattgacgtagatgccatttgtcaaggtattgatttctgctcaccagttactc 29582116  T
Q  212 gtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatggataagaaaattgtaga 311  Q
    | || |||||||||||| | ||||| |||||||||||||| ||||||||||  ||||  ||||||||   ||||||||| ||||  ||||  | ||||||    
T  29582117 gggccaagtttgagcaaatcaacatcgacctctttgaaaaatgtatggagattgttgggagttgtctacgtgatgctaacatggtcaagagtagtgtaga 29582216  T
Q  312 tgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagcagctacttcaagactttttcgacggaaaggatctgtgtatgagc 402  Q
    |||| | || ||| |||| || ||||| || ||||| |||||| | |||||| | ||||| |||||| | || |||||| |||| ||||||    
T  29582217 tgatatcgtccttattggtggctcttctagaattcccaaagtgcatcagctattgcaagaatttttcaaggggaaggatttgtgcatgagc 29582307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 359
Target Start/End: Complemental strand, 17267855 - 17267684
Alignment:
Q  188 ttgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgc 287  Q
    ||||||||| ||| ||||| |||||||| ||||||||| || | || |||||||| |||||  |||| |||||||  ||||| |  ||||||| ||||||    
T  17267855 ttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgatgc 17267756  T
Q  288 taaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagca 359  Q
    ||| || || ||||  |  || ||||||||||| |||||||| || ||||| ||||||||||||||| ||||    
T  17267755 taagattgacaagagcagagttgatgatgttgtccttgttggtgggtcttctaggattccgaaagtgcagca 17267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 8559272 - 8559170
Alignment:
Q  160 attgatatcgatgctatatctgatggtattgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatgg 259  Q
    ||||| || |||||||||| | | || ||||| || ||||||||||| || || ||||||||||||||||| || ||||| |||||||||||||||||||    
T  8559272 attgacatagatgctatatgtcagggcattgacttgtgttcatcaatcacacgggctaagtttgagcaactgaatatggatctctttgaaaagtgtatgg 8559173  T
Q  260 aga 262  Q
    |||    
T  8559172 aga 8559170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 208 - 363
Target Start/End: Original strand, 27831147 - 27831302
Alignment:
Q  208 actcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatggataagaaaattg 307  Q
    |||||||| ||||||||| || | || |||||||| ||  |  | ||||||||||| ||||| |||||||| |||||  |||| ||||| ||||  | |     
T  27831147 actcgtgcaaagtttgaggaaatcaatatggaccttttcaatgaatgtatggagactgttgagagttgtctcactgactctaagatggacaagagtagta 27831246  T
Q  308 tagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagcagcta 363  Q
    ||||||||||||| |||||||| || ||||| |||||||| |||||| ||||||||    
T  27831247 tagatgatgttgtccttgttggtggctcttcaaggattcccaaagtgcagcagcta 27831302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 8667426 - 8667283
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgattttt 196  Q
    ||||||||||| ||||| ||||||||||||||||||| ||| || |||| |  || | |||   ||||  | |||||| ||| |   || || || ||||    
T  8667426 aggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttgaggtagatgctttatttacgggaatcgactttt 8667327  T
Q  197 gttcatcaattactcgtgctaagtttgagcaacttaacatggac 240  Q
    |||||||||||||||||||||| |||||| ||||||||||||||    
T  8667326 gttcatcaattactcgtgctaaatttgaggaacttaacatggac 8667283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 347
Target Start/End: Original strand, 8636597 - 8636754
Alignment:
Q  190 gatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgcta 289  Q
    |||||||||||||  || |||||||| | ||||||| |||| || ||||||||||||   |||||| ||||||||||  | |  |||||||  ||| | |    
T  8636597 gatttttgttcattgataactcgtgcgaggtttgaggaactcaatatggacctctttatgaagtgtgtggagacggtgaatacgtgtcttaaagattcaa 8636696  T
Q  290 aaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattcc 347  Q
    | ||||||||||  | | ||||||||||||| |||||||| || || || ||||||||    
T  8636697 atatggataagagcaatatagatgatgttgtccttgttggtggctcctctaggattcc 8636754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 8664978 - 8664901
Alignment:
Q  186 tattgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagac 263  Q
    |||||| |||||||||||||| |||||||| | ||||||| || | || |||||||| |||  |||||||||||||||    
T  8664978 tattgaattttgttcatcaataactcgtgcgaggtttgaggaaatcaatatggacctttttacaaagtgtatggagac 8664901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 17260035 - 17259986
Alignment:
Q  310 gatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagca 359  Q
    ||||||||||| |||||||| |||||||| ||||||||||||||| ||||    
T  17260035 gatgatgttgtccttgttggtggatcttctaggattccgaaagtgcagca 17259986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 8017497 - 8017599
Alignment:
Q  20 acagaatggttaatcactttgtgaaggagttcaaaaggaagcattcaaaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtga 119  Q
    |||||||||||||||| |||||  ||||||| || |||||| |    || ||||| ||||| ||| | || || ||||||||||||||||| ||||||||    
T  8017497 acagaatggttaatcattttgttcaggagtttaagaggaagaacaagaaggatattagtggaaaccctagagcacttaggaggttgaggacagcttgtga 8017596  T
Q  120 gag 122  Q
    |||    
T  8017597 gag 8017599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 39985677 - 39985631
Alignment:
Q  73 atcagtgggaactcgagggctcttaggaggttgaggactgcttgtga 119  Q
    |||||||| ||| | || |||||||||||||||||||||||||||||    
T  39985677 atcagtggcaaccccagagctcttaggaggttgaggactgcttgtga 39985631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 1301467 - 1301427
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacact 137  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  1301467 aggaggttgagaattgcgtgtgagagggcaaaaaggacact 1301427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 8545717 - 8545677
Alignment:
Q  20 acagaatggttaatcactttgtgaaggagttcaaaaggaag 60  Q
    |||||||||| ||| ||||||||||||||||||| ||||||    
T  8545717 acagaatggtgaattactttgtgaaggagttcaagaggaag 8545677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 8654457 - 8654421
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaagga 133  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  8654457 aggaggttgagaactgcctgtgagagggcaaaaagga 8654421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 8659370 - 8659330
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacact 137  Q
    ||||||||||| ||||| |||||||||||||| ||||||||    
T  8659370 aggaggttgagaactgcctgtgagagggcaaagaggacact 8659330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 10494535 - 10494571
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaagga 133  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  10494535 aggaggttgagaactgcctgtgagagggcaaaaagga 10494571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 118 - 363
Target Start/End: Complemental strand, 12528490 - 12528245
Alignment:
Q  118 gagagggcaaaaaggacactttcatttgatactgatgccatgattgatatcgatgctatatctgatggtattgatttttgttcatcaattactcgtgcta 217  Q
    |||| ||| ||||||||||||||||  ||||| || || |  ||||| || |||||||||| ||| || ||||| || || |||||||| ||||| || |    
T  12528490 gagaaggcgaaaaggacactttcatacgatacagaggctacaattgacatagatgctatatgtgagggcattgacttctgctcatcaatcactcgagcca 12528391  T
Q  218 agtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgt 317  Q
    |||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||| | || |||||||| ||||| ||||  | |||||||||| |    
T  12528390 agttcgagcaactgaatatggacctctttgaaaagtgtatggagaccgttgaaagttgtttgaccgatgctaagatggacaagagtagtgtagatgatat 12528291  T
Q  318 tgttcttgttggcggatcttcgaggattccgaaagtgaagcagcta 363  Q
    ||| |||||||| || || || |||||||| |||||||||||||||    
T  12528290 tgtacttgttggtggctcgtctaggattcccaaagtgaagcagcta 12528245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 43744655 - 43744567
Alignment:
Q  265 gttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagt 353  Q
    ||||| ||||||||||||||||| || ||||| ||||    | || ||||||||||||||||||| || || || |||||||| |||||    
T  43744655 gttgagagttgtcttactgatgccaagatggacaagagcgctatacatgatgttgttcttgttggtggctcctctaggattccaaaagt 43744567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 378
Target Start/End: Complemental strand, 35132290 - 35132182
Alignment:
Q  271 agttgtcttactgatgctaaaatggataagaa-aattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagcagctacttcaa 369  Q
    |||||||| | ||||||||| ||||| ||||  ||  ||||||||||||||||||||||| || ||||| |||||||| |||||| |||||||| | |||    
T  35132290 agttgtctcattgatgctaagatggacaagagcaagggtagatgatgttgttcttgttggagggtcttctaggattcccaaagtgcagcagctattgcaa 35132191  T
Q  370 gactttttc 378  Q
     ||||||||    
T  35132190 aactttttc 35132182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 354
Target Start/End: Complemental strand, 30775169 - 30775002
Alignment:
Q  187 attgatttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgatg 286  Q
    ||||| |||| ||||||||| |||||||  ||||||||| || | || |||||||| ||| |  |||||||  |||| ||||| |||||||||||||||     
T  30775169 attgacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtatacagactgttgagagttgtcttactgatt 30775070  T
Q  287 ctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtg 354  Q
    | ||  | || ||||  | |||||||||| |||||||||| || || ||||| |||||||| ||||||    
T  30775069 caaaggtagacaagagtagtgtagatgatattgttcttgtcggtggttcttctaggattcccaaagtg 30775002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 23596932 - 23596984
Alignment:
Q  283 gatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatc 335  Q
    |||||||| ||||||||||| | ||| ||||||||||||||||||||||||||    
T  23596932 gatgctaagatggataagaacagtgttgatgatgttgttcttgttggcggatc 23596984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 23596716 - 23596789
Alignment:
Q  67 aaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtgagagggcaaaaaggacactttc 140  Q
    |||||||| ||||| ||  | ||||||||||| |||||||| |||||||||||||| || || ||||| |||||    
T  23596716 aaagatattagtggaaatccaagggctcttagaaggttgagaactgcttgtgagagagctaagaggactctttc 23596789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 9336052 - 9336088
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaagga 133  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  9336052 aggaggttgagaactgcctgtgagagggcaaaaagga 9336088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 23588080 - 23588132
Alignment:
Q  283 gatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatc 335  Q
    |||||||| ||||||||||| | |||  ||||||||||||||||||| |||||    
T  23588080 gatgctaagatggataagaacagtgtccatgatgttgttcttgttggtggatc 23588132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 363
Target Start/End: Original strand, 12258905 - 12259008
Alignment:
Q  260 agacggttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagtgaagca 359  Q
    |||| ||||| ||||||||||| |||||||| | ||| ||||  | ||||||||||||||| ||||| || || ||||| |||||||  |||||| ||||    
T  12258905 agactgttgagagttgtcttacggatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagca 12259004  T
Q  360 gcta 363  Q
    ||||    
T  12259005 gcta 12259008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 7542065 - 7541983
Alignment:
Q  265 gttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattcc 347  Q
    |||| ||| ||||||| ||||||||| ||||| ||||  ||  ||||||||||||| ||||| ||||| ||||||||||||||    
T  7542065 gttggaagctgtcttattgatgctaatatggacaagagcatgatagatgatgttgtccttgtcggcgggtcttcgaggattcc 7541983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 17666767 - 17666872
Alignment:
Q  20 acagaatggttaatcactttgtgaaggagttcaaaaggaagcattcaaaagatatcagtgggaactcgagggctcttaggaggttgaggactgcttgtga 119  Q
    |||||||||| |||||||||||  | ||||||||||| ||| |    || || |||||||| ||| | || ||||||| ||||||| |||||||||||||    
T  17666767 acagaatggtgaatcactttgttcaagagttcaaaagaaagaacaacaaggacatcagtggcaacccaagagctcttatgaggttggggactgcttgtga 17666866  T
Q  120 gagggc 125  Q
    ||||||    
T  17666867 gagggc 17666872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 14703247 - 14703159
Alignment:
Q  265 gttgaaagttgtcttactgatgctaaaatggataagaaaattgtagatgatgttgttcttgttggcggatcttcgaggattccgaaagt 353  Q
    ||||| |||||||||| ||||||||| ||||| ||||  |  |||||||||||||||||||| || || |||||  ||||||| |||||    
T  14703247 gttgagagttgtcttattgatgctaagatggacaagagtagagtagatgatgttgttcttgtcggtgggtcttctcggattcccaaagt 14703159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 7542233 - 7542190
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacactttc 140  Q
    ||||||||||| |||||||||||||||||||||||  |||||||    
T  7542233 aggaggttgagaactgcttgtgagagggcaaaaagatcactttc 7542190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 11999414 - 11999367
Alignment:
Q  97 aggaggttgaggactgcttgtgagagggcaaaaaggacactttcattt 144  Q
    ||||||||||| ||||||||||||||||||||||| | ||| ||||||    
T  11999414 aggaggttgagaactgcttgtgagagggcaaaaagaatactatcattt 11999367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 17716842 - 17716876
Alignment:
Q  91 gctcttaggaggttgaggactgcttgtgagagggc 125  Q
    ||||||| |||||||||||||||||||||||||||    
T  17716842 gctcttatgaggttgaggactgcttgtgagagggc 17716876  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 16657657 - 16657718
Alignment:
Q  76 agtgggaactcgagggctcttaggaggttgaggactgcttgtgagagggcaaaaaggacact 137  Q
    ||||||||||| || ||  | ||||||||||| ||||| |||||||||||||| ||||||||    
T  16657657 agtgggaactcaagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacact 16657718  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 17622082 - 17622130
Alignment:
Q  73 atcagtgggaactcgagggctcttaggaggttgaggactgcttgtgaga 121  Q
    |||||||| ||| | || ||||||| |||||||||||||||||||||||    
T  17622082 atcagtggcaacccaagagctcttatgaggttgaggactgcttgtgaga 17622130  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 28219835 - 28219797
Alignment:
Q  187 attgatttttgttcatcaattactcgtgctaagtttgag 225  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  28219835 attgatttcttttcatcaattactcgtgctaagtttgag 28219797  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 4678814 - 4678906
Alignment:
Q  193 ttttgttcatcaattactcgtgctaagtttgagcaacttaacatggacctctttgaaaagtgtatggagacggttgaaagttgtcttactgat 285  Q
    |||| |||||| ||||||||||| ||||||||| || |||| |||||||| ||  |  |||||||||| || ||| | |||||||||| ||||    
T  4678814 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 4678906  T

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