View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_15 (Length: 364)
Name: NF8672_high_15
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 48817258 - 48816908
Alignment:
| Q |
1 |
ctcattcctaaatcaacgcctccaattgcagtcgtcttttgcggcaatagaagtttcgtaaccaatcgaatttctcgcttatgcgttagggtttccatgt |
100 |
Q |
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| T |
48817258 |
ctcattcctaaatcaacgcctccaattgcagtcgtcttttgcggcaatagaagtttcgtaaccaatcgaatttctcgcttatgcgttagggtttccatgt |
48817159 |
T |
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| Q |
101 |
ttgactcctcctcttcgtcttccgattttactaagcgcatggaacaagcctggttaatctctcaggttccaaatccaatcttcaactccaattttatgtt |
200 |
Q |
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| T |
48817158 |
ttgactcctcctcttcgtcttccgattttactaagcgcatggaacaagcctggttaatctctcaggttccaaatcaaatcttcaactccaattttatgtt |
48817059 |
T |
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| Q |
201 |
tttgttcctgttcaatttatttccaattttatgtttctgctactgttatgccatcaattatccgttttgaaggttccttttttagggttttcacttgtcc |
300 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48817058 |
tttgttcctgttcaatttatttccagttttctgtttctgctaccgttatgccatcaattatccgttttgaaggttccttttttagggttttcacttgtcc |
48816959 |
T |
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| Q |
301 |
atggtttgttgtgttatggttgggcctaaacaagccttttactgcagtata |
351 |
Q |
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| T |
48816958 |
atggtttgttgtgttatggttgggcctaaacaagccttttactgcagtata |
48816908 |
T |
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