View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_16 (Length: 352)
Name: NF8672_high_16
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 161 - 331
Target Start/End: Original strand, 5496064 - 5496234
Alignment:
| Q |
161 |
cacgttagaatgtaataaatgaatgcaagttatatgcggacaaaataaactattagtgggaatgaaacgtggtgctgttgatagcatttcgtgtctcgtt |
260 |
Q |
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| T |
5496064 |
cacgttagaatgtaataaatgaatgcaagttatatgcggacaaaataaactattagtgggaatgaaacgtggtgctgttgatagcatttcgtgtctcgtt |
5496163 |
T |
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| Q |
261 |
ttcaaattgacctatttcatttaatttaaataaaatatataggtgtaagaatataaataaatgagggagat |
331 |
Q |
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| T |
5496164 |
ttcaaattgacctatttcatttaatttaaataaaatatataggtgtaagaatataaataaatgagggagat |
5496234 |
T |
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