View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_19 (Length: 324)
Name: NF8672_high_19
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 308
Target Start/End: Original strand, 47339830 - 47340135
Alignment:
| Q |
3 |
acaattggctctcaccgtgttgcagaaggttgattttgaacgtctggacattgacggaaacttcatttctgatgaaggtattaaagagttaatggttata |
102 |
Q |
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| T |
47339830 |
acaattggctctcactgtgttgcagaaggttgattttgaacgtctggacattgacggaaacttcatttctgatgaaggtattaaagagttaatggttata |
47339929 |
T |
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| Q |
103 |
tttgaaaaatctccggacaagcttggtccattagatgaaaatgaccctgatggaaaagacggtgatgaagaatctgatgaagagggtggtgtggaggatg |
202 |
Q |
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| T |
47339930 |
tttgaaaaatctccggacaagcttggtccattagatgaaaatgaccctgatggaaaagacggtgatgaagaatctgacgaagagggtggtgtggaggatg |
47340029 |
T |
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| Q |
203 |
cactggaatccaaaatgaagaaccttgtagttgattgaattgtaactgttagtagctttctggttctactgcagaagtaactcttatgacattagtatca |
302 |
Q |
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| T |
47340030 |
cactggaatccaaaatgaagaaccttgtagttgattgaattgtaactgttagtagcttactggttctactgcagaagtaactcttatgacattagtatca |
47340129 |
T |
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| Q |
303 |
gtttat |
308 |
Q |
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|||||| |
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| T |
47340130 |
gtttat |
47340135 |
T |
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