View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_20 (Length: 323)
Name: NF8672_high_20
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 55669111 - 55669414
Alignment:
| Q |
18 |
gaaagtttgaccaaacgctttacaaaacaacatgtaagcaatttgtaaattcgcgagaaacttccttcgcgatatatagcatctctctttagcttaatgc |
117 |
Q |
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| T |
55669111 |
gaaagtttgaccaaacgctttacaaaacaacatgtaagcaatttgtaaattcgcgagaaacttccttcgcgatatatagcatctctctttagcttaatgc |
55669210 |
T |
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| Q |
118 |
cttaaaaatttgttaattcgttcataaaaattgctaaaatgagggatttataaatgaaaatcggaaattttttgtgtgtgtggaaaatagaaaagaaggt |
217 |
Q |
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| T |
55669211 |
cttaaaaatttgttaattcgttcataaaaattgctaaaatgagggatttataaatgaaaatcggaaattttt--tgtgtgtggaaaatagaaaagaaggt |
55669308 |
T |
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| Q |
218 |
taaataatattactagtggcatttcataatattatgtatgtagaagaaccaaggttcataatattatgcatctatacagctcaataccatcaatggacat |
317 |
Q |
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| T |
55669309 |
taaataatattactagtggcatttcataatattatgtatgtagaagaaccaaggttcataatattatgcatctatacagctcaataccatcaatggacat |
55669408 |
T |
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| Q |
318 |
catatt |
323 |
Q |
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|||||| |
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| T |
55669409 |
catatt |
55669414 |
T |
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