View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8672_high_25 (Length: 304)
Name: NF8672_high_25
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_25 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 43383338 - 43383626
Alignment:
| Q |
16 |
atattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaaccctcctcctaatttcagaagacaacaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43383338 |
atattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaaccctccacctaatttcagaagacaacaac |
43383437 |
T |
|
| Q |
116 |
ttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatccaaagaacaagaaagc---agcaaaatcaacaacaac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
43383438 |
ttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatccaaagaacaagaaagcaaaagcaaaagcaacaacaac |
43383537 |
T |
|
| Q |
213 |
ggtgatggtcgatgagaatgatcagtttgtgtgttcatgttgtaacaaagtatttggatcccatcaggcacttggaggacatagggctagtc |
304 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43383538 |
gg---tggtcgatgaggatgatcagtttgtgtgttcgtgttgtaacaaagtatttggatcccatcaggcacttggaggacacagggctagtc |
43383626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 25870059 - 25870356
Alignment:
| Q |
16 |
atattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagaggcattaaccctcctcctaatttcagaagacaacaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25870059 |
atattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagaggcattaaccctcctcctaatttcagaagacaacaac |
25870158 |
T |
|
| Q |
116 |
ttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatccaaagaacaagaa-agcagca--------aaatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | || ||| | |
|
|
| T |
25870159 |
aacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaatccaaagaacaagaacaagaacaagaacaagaaaac |
25870258 |
T |
|
| Q |
204 |
aacaacaacggtgatggtcgatgagaatgatcagtttgtgtgttcatgttgtaacaaagtatttggatcccatcaggcacttggaggacatagggctagt |
303 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25870259 |
aacaacaacggtggtggatgatgag---gatcagtttgtgtgttcgtgttgcaacaaagtatttggatcccatcaggcacttggaggacacagggctagt |
25870355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University