View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8672_high_33 (Length: 252)
Name: NF8672_high_33
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_33 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 25089093 - 25088858
Alignment:
| Q |
16 |
actctctccgtccaaattataaacaaatttttaatctttacacattcattcaataaatgatgtatatgatctaaagagactatataccacatatatatta |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||| | |
|
|
| T |
25089093 |
actctctccgtccaaattataagcaaatttttaatttttacacattcattcaataaatgatgtatatggtctacatagactatagaccacatatata--a |
25088996 |
T |
|
| Q |
116 |
tttattaaatgaatttnnnnnnnnnnnn-tttagttataattgagaccagagagaatacatatgaacttatcagttcttattagaaagaaacatcgataa |
214 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25088995 |
tttattaaataaatttaaaaaaataaaaatttacttataattgagaccagagagattacatatgaactcatcagttcttattagaaagaaacatcgataa |
25088896 |
T |
|
| Q |
215 |
tatagagtacccatagaatgtgagtataatctacccac |
252 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
25088895 |
tatagagtacccatagaatgtgagtaaaatctagccac |
25088858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 10983886 - 10983915
Alignment:
| Q |
59 |
attcattcaataaatgatgtatatgatcta |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10983886 |
attcattcaataaatgatgtatatgatcta |
10983915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 27165267 - 27165238
Alignment:
| Q |
59 |
attcattcaataaatgatgtatatgatcta |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27165267 |
attcattcaataaatgatgtatatgatcta |
27165238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 43893156 - 43893184
Alignment:
| Q |
60 |
ttcattcaataaatgatgtatatgatcta |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43893156 |
ttcattcaataaatgatgtatatgatcta |
43893184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University