View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_34 (Length: 250)
Name: NF8672_high_34
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 7878280 - 7878501
Alignment:
| Q |
10 |
tttggtgttgcaagatgttactccattgtctcttggcacgtcagtacttgacgatatcatggatgtagtgattcctaagaacacttcttttccaataaag |
109 |
Q |
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| T |
7878280 |
tttggtgttgcaagatgttactccattgtctcttggcacgtcagtacttgacgatatcatggatgtagtgattcctaagaacacttcttttccaataaag |
7878379 |
T |
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| Q |
110 |
aggaaacgaacattctgcacacttgcagatgaccaatccacagtcaaaattgatgtttatgagggtgagagaatggttgtaggtgagaacaatttgcttg |
209 |
Q |
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| T |
7878380 |
aggaaacgaacattctgcacacttgaagatgaccaatccgatgtcaaaattgatgtttacgagggtgagagaatggttgtaggtgagaacaatttgcttg |
7878479 |
T |
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| Q |
210 |
gtttgtttgatctcgaagttcg |
231 |
Q |
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| T |
7878480 |
gtttgtttgatctcgaagttcg |
7878501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 231
Target Start/End: Complemental strand, 8590259 - 8590038
Alignment:
| Q |
10 |
tttggtgttgcaagatgttactccattgtctcttggcacgtcagtacttgacgatatcatggatgtagtgattcctaagaacacttcttttccaataaag |
109 |
Q |
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| T |
8590259 |
tttggtgctacaagatgttactccattgtctcttggtacgtcaatatatgatgatatcatggatgtagtgattcctaagaacacttctattcctataagg |
8590160 |
T |
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| Q |
110 |
aggaaacgaacattctgcacacttgcagatgaccaatccacagtcaaaattgatgtttatgagggtgagagaatggttgtaggtgagaacaatttgcttg |
209 |
Q |
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| T |
8590159 |
aaaaagcaagaatacgtcacatgttatgatgatcaatccagtgtcaacattgatgtttatgagggtgagagaatggttgcgattgagaacaacttgcttg |
8590060 |
T |
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| Q |
210 |
gtttgtttgatctcgaagttcg |
231 |
Q |
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| T |
8590059 |
gtttgtttaatctcaaagttcg |
8590038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 8545114 - 8545034
Alignment:
| Q |
150 |
cagtcaaaattgatgtttatgagggtgagagaatggttgtaggtgagaacaatttgcttggtttgtttgatctcgaagttc |
230 |
Q |
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| T |
8545114 |
cagtccaaattaatgtttatgagggtgagagaattattgcgagtgagaacaacttgcttggtttattttatctcaaagttc |
8545034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 8609389 - 8609320
Alignment:
| Q |
159 |
ttgatgtttatgagggtgagagaatggttgtaggtgagaacaatttgcttggtttgtttgatctcgaagt |
228 |
Q |
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| T |
8609389 |
ttgatgtttacgagggtgagagatctgttgctagtgagaacaatttgcttggtttatttgaactcaaagt |
8609320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 35132076 - 35131992
Alignment:
| Q |
11 |
ttggtgttgcaagatgttactccattgtctcttggcacgtcagtacttgacgatatcatggatgtagtgattcctaagaacactt |
95 |
Q |
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| T |
35132076 |
ttggtgttacaggatgttacacctttgtctcttggtaggtcaatagtaggagatatcatgaatgtggtgattcctaggaacactt |
35131992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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