View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8672_high_35 (Length: 249)

Name: NF8672_high_35
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8672_high_35
NF8672_high_35
[»] chr2 (33 HSPs)
chr2 (1-241)||(42409150-42409390)
chr2 (174-217)||(24097815-24097858)
chr2 (174-224)||(9395130-9395180)
chr2 (174-224)||(42621395-42621445)
chr2 (174-234)||(9556229-9556289)
chr2 (180-244)||(15377745-15377809)
chr2 (174-217)||(40158725-40158768)
chr2 (179-228)||(36863650-36863699)
chr2 (177-234)||(42817399-42817456)
chr2 (174-225)||(4026816-4026867)
chr2 (174-237)||(9477939-9478002)
chr2 (174-225)||(10567056-10567107)
chr2 (174-217)||(15977992-15978035)
chr2 (174-217)||(35379036-35379079)
chr2 (174-220)||(1939352-1939398)
chr2 (174-224)||(5759595-5759645)
chr2 (174-228)||(10563578-10563632)
chr2 (174-224)||(33319832-33319882)
chr2 (174-224)||(36852472-36852522)
chr2 (179-224)||(10884546-10884591)
chr2 (180-241)||(13869121-13869182)
chr2 (174-215)||(16398123-16398164)
chr2 (174-222)||(3227703-3227751)
chr2 (177-217)||(6993747-6993787)
chr2 (181-241)||(8017417-8017477)
chr2 (180-224)||(13736319-13736363)
chr2 (174-234)||(18179260-18179320)
chr2 (174-226)||(33391027-33391079)
chr2 (174-241)||(34339889-34339956)
chr2 (174-210)||(36395307-36395343)
chr2 (174-234)||(39983332-39983392)
chr2 (188-224)||(40435015-40435051)
chr2 (177-221)||(43600708-43600752)
[»] chr4 (21 HSPs)
chr4 (174-228)||(18628563-18628617)
chr4 (174-217)||(8468955-8468998)
chr4 (175-221)||(4191721-4191767)
chr4 (174-224)||(7694030-7694080)
chr4 (174-224)||(27721717-27721767)
chr4 (174-224)||(53673678-53673728)
chr4 (177-234)||(36722692-36722749)
chr4 (174-234)||(43824273-43824333)
chr4 (174-217)||(11802541-11802584)
chr4 (174-216)||(825510-825552)
chr4 (176-214)||(10194716-10194754)
chr4 (174-224)||(43932435-43932485)
chr4 (174-224)||(47800623-47800673)
chr4 (174-224)||(55414440-55414490)
chr4 (196-241)||(24091446-24091491)
chr4 (174-222)||(4500848-4500896)
chr4 (202-234)||(9908074-9908106)
chr4 (174-234)||(11158377-11158437)
chr4 (174-234)||(29601028-29601088)
chr4 (174-218)||(50004164-50004208)
chr4 (180-228)||(56480344-56480392)
[»] chr1 (26 HSPs)
chr1 (174-228)||(35179135-35179189)
chr1 (177-224)||(11639439-11639486)
chr1 (175-215)||(27807105-27807145)
chr1 (174-234)||(41853787-41853847)
chr1 (174-224)||(4700086-4700136)
chr1 (174-224)||(32113658-32113708)
chr1 (178-226)||(51929799-51929847)
chr1 (174-241)||(15361696-15361763)
chr1 (174-217)||(25479588-25479631)
chr1 (189-228)||(51957418-51957457)
chr1 (174-224)||(7137018-7137068)
chr1 (174-224)||(7472311-7472361)
chr1 (177-239)||(16322834-16322896)
chr1 (176-210)||(26916215-26916249)
chr1 (176-234)||(44422689-44422747)
chr1 (174-219)||(1565152-1565197)
chr1 (174-231)||(4576798-4576855)
chr1 (174-215)||(10199428-10199469)
chr1 (177-234)||(28482256-28482313)
chr1 (176-217)||(37241844-37241885)
chr1 (177-222)||(38867854-38867899)
chr1 (183-228)||(48282130-48282175)
chr1 (202-234)||(36581588-36581620)
chr1 (174-214)||(37593704-37593744)
chr1 (177-217)||(38651454-38651494)
chr1 (174-238)||(39347987-39348051)
[»] chr5 (25 HSPs)
chr5 (174-234)||(37588380-37588440)
chr5 (174-234)||(35553208-35553268)
chr5 (174-234)||(37526219-37526279)
chr5 (174-217)||(27565370-27565413)
chr5 (179-234)||(36639512-36639567)
chr5 (174-232)||(1550889-1550947)
chr5 (175-225)||(7319029-7319079)
chr5 (174-214)||(3970700-3970740)
chr5 (174-234)||(18875351-18875411)
chr5 (174-218)||(36638753-36638797)
chr5 (174-233)||(8651373-8651431)
chr5 (174-217)||(15074769-15074812)
chr5 (174-221)||(36774727-36774774)
chr5 (174-208)||(3504760-3504794)
chr5 (173-223)||(3977309-3977359)
chr5 (186-228)||(6582864-6582906)
chr5 (174-228)||(41957471-41957525)
chr5 (174-223)||(4014444-4014493)
chr5 (174-215)||(10125738-10125779)
chr5 (174-223)||(17258903-17258952)
chr5 (174-234)||(37690656-37690717)
chr5 (174-234)||(7319396-7319456)
chr5 (174-218)||(13604869-13604913)
chr5 (174-234)||(16328856-16328915)
chr5 (174-234)||(16863770-16863830)
[»] chr3 (18 HSPs)
chr3 (174-234)||(14548741-14548801)
chr3 (174-224)||(34254828-34254878)
chr3 (174-228)||(40665425-40665479)
chr3 (175-233)||(48286831-48286889)
chr3 (175-224)||(2719468-2719517)
chr3 (174-223)||(41633361-41633410)
chr3 (174-218)||(3845582-3845626)
chr3 (177-217)||(8933794-8933834)
chr3 (174-217)||(1816590-1816633)
chr3 (174-221)||(44284100-44284147)
chr3 (174-224)||(20502088-20502138)
chr3 (179-228)||(24158528-24158577)
chr3 (174-239)||(48807693-48807758)
chr3 (178-230)||(21661508-21661560)
chr3 (174-234)||(24280701-24280761)
chr3 (174-218)||(24887303-24887347)
chr3 (174-218)||(48528562-48528606)
chr3 (177-217)||(51510216-51510256)
[»] chr7 (25 HSPs)
chr7 (174-228)||(44821955-44822009)
chr7 (174-221)||(7244683-7244730)
chr7 (174-237)||(21453281-21453344)
chr7 (175-224)||(6601367-6601416)
chr7 (174-239)||(24363621-24363686)
chr7 (180-232)||(30723065-30723117)
chr7 (174-234)||(33709438-33709498)
chr7 (180-227)||(29363515-29363562)
chr7 (174-217)||(39505963-39506006)
chr7 (175-226)||(40252128-40252179)
chr7 (174-234)||(46082024-46082086)
chr7 (174-224)||(514767-514817)
chr7 (174-224)||(25596033-25596083)
chr7 (187-221)||(27517314-27517348)
chr7 (179-217)||(39542325-39542363)
chr7 (182-224)||(47559629-47559671)
chr7 (174-239)||(25507334-25507399)
chr7 (175-228)||(28691856-28691909)
chr7 (176-217)||(46104589-46104630)
chr7 (176-217)||(48917368-48917409)
chr7 (179-223)||(19530185-19530229)
chr7 (174-218)||(27378848-27378892)
chr7 (180-224)||(33645987-33646030)
chr7 (177-241)||(40689009-40689073)
chr7 (180-224)||(47941323-47941367)
[»] chr8 (20 HSPs)
chr8 (174-239)||(31862478-31862543)
chr8 (177-222)||(35220746-35220791)
chr8 (174-234)||(11795082-11795142)
chr8 (174-221)||(20672753-20672800)
chr8 (174-224)||(27028831-27028881)
chr8 (174-216)||(27754412-27754454)
chr8 (178-228)||(34551116-34551166)
chr8 (174-234)||(12361182-12361242)
chr8 (174-218)||(44236843-44236887)
chr8 (174-225)||(9700000-9700051)
chr8 (177-228)||(10075574-10075625)
chr8 (179-234)||(13652205-13652260)
chr8 (179-234)||(13710848-13710903)
chr8 (174-241)||(39268524-39268591)
chr8 (174-216)||(1433556-1433598)
chr8 (179-217)||(10923603-10923641)
chr8 (174-224)||(11494146-11494196)
chr8 (174-224)||(28769359-28769409)
chr8 (145-217)||(40157519-40157585)
chr8 (183-223)||(25097387-25097427)
[»] chr6 (15 HSPs)
chr6 (174-215)||(32387075-32387116)
chr6 (174-234)||(1275139-1275199)
chr6 (174-234)||(33787765-33787825)
chr6 (174-217)||(32386583-32386626)
chr6 (174-236)||(3168281-3168343)
chr6 (177-224)||(28641772-28641819)
chr6 (174-228)||(8364996-8365050)
chr6 (177-243)||(28088245-28088311)
chr6 (174-224)||(32386126-32386176)
chr6 (174-234)||(4247081-4247141)
chr6 (174-226)||(6647385-6647437)
chr6 (177-217)||(31812036-31812076)
chr6 (174-218)||(32171403-32171447)
chr6 (174-234)||(32171457-32171517)
chr6 (174-234)||(32848616-32848676)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42409150 - 42409390
Alignment:
Q  1 taacagttataggaaagttaatacaaaattcatcagataaacaattgtctaagagcatctttggaccgatttatttgagtttatctaccagtattagcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42409150 taacagttataggaaagttaatacaaaattcatcagataaacaattgtctaagagcatctttggaccgatttatttgagtttatctactagtattagcat 42409249  T
Q  101 ttgtgagactctttgaaggcatgtgtggattaccttatttgagtttatgatatgtgtataagttgtcttcaacttcagcttattttcataagctctccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409250 ttgtgagactctttgaaggcatgtgtggattaccttatttgagtttatgatatgtgtataagttgtcttcaacttcagcttattttcataagctctccag 42409349  T
Q  201 aataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42409350 aataacttatgaaaacagtttataacttgtatgagaataat 42409390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 24097858 - 24097815
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  24097858 ttcagcttattttcataagctctccaggataacttatgaaaaca 24097815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 9395180 - 9395130
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  9395180 ttcagcttattttcataagctctacagaataactaatgaaaacagcttata 9395130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 42621395 - 42621445
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  42621395 ttcagcttattttcacaagttctccagaataacttatgaaaacagcttata 42621445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 9556289 - 9556229
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||| |||||||||||||||| || || ||| ||||||||||||||||||| |||||||||    
T  9556289 ttcaacttattttcataagctttctaggatagcttatgaaaacagtttatagcttgtatga 9556229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 15377809 - 15377745
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataatcta 244  Q
    ||||||||||||||||  ||||||| ||||||||||||| ||||||||| ||||| || ||||||    
T  15377809 ttattttcataagctcctcagaatagcttatgaaaacagcttataacttatatgaaaacaatcta 15377745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 40158768 - 40158725
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  40158768 ttcagcttaattacataagctctccagaataacttatgaaaaca 40158725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 36863650 - 36863699
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||||||||||||||||||||  ||| |||||||||||| ||||||||||    
T  36863650 cttattttcataagctctccaagatagcttatgaaaacaatttataactt 36863699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 42817399 - 42817456
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||| || |||||||||| ||||||| |||||||||||||||||| |||| |||||    
T  42817399 agcttacttccataagctcttcagaatagcttatgaaaacagtttattacttatatga 42817456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 4026867 - 4026816
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataa 225  Q
    ||||||||||||||||||| ||| ||| |||| |||||||||||| ||||||    
T  4026867 ttcagcttattttcataagttcttcaggataatttatgaaaacagcttataa 4026816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 9478002 - 9477939
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaa 237  Q
    |||| ||||||||||||| |||||||| ||| ||||||||||||  ||||||||| || |||||    
T  9478002 ttcaacttattttcataacctctccaggatagcttatgaaaacaacttataacttatacgagaa 9477939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 10567107 - 10567056
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataa 225  Q
    ||||||| ||||||| |||||||||||||||  ||||| |||||||||||||    
T  10567107 ttcagctaattttcacaagctctccagaatagtttatggaaacagtttataa 10567056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 15978035 - 15977992
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||    
T  15978035 ttcagcttattttcataatctctccaaaatagcttatgaaaaca 15977992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 35379036 - 35379079
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||    
T  35379036 ttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 1939352 - 1939398
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtt 220  Q
    |||| ||||||| |||||||||||||| ||| |||||||||||||||    
T  1939352 ttcaacttatttccataagctctccagtatagcttatgaaaacagtt 1939398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 5759595 - 5759645
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||| || | |||||||||| ||||||||||||| |||||    
T  5759595 ttcagcttattttcacaaaccctccagaatagcttatgaaaacagcttata 5759645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 10563578 - 10563632
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||||||||||||| |||||||| ||| ||| ||||||||||||  |||||||||    
T  10563578 ttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataactt 10563632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 33319832 - 33319882
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||| ||||||  |||  ||||||||||||||||||    
T  33319832 ttcagcttattttcataagttctccaagatagtttatgaaaacagtttata 33319882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 36852522 - 36852472
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||| |||||| |||||||||||||  ||| |||||||||||||||||||    
T  36852522 ttcagattatttccataagctctccaagatagcttatgaaaacagtttata 36852472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10884546 - 10884591
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||| || ||| ||||||||||||| |||||    
T  10884546 cttattttcataagctctctaggatagcttatgaaaacagcttata 10884591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 13869121 - 13869182
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    |||||||||| || ||||||| ||||||||||||||||| ||||| |||  |||| ||||||    
T  13869121 ttattttcattagttctccaggataacttatgaaaacagcttatagcttagatgaaaataat 13869182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 16398164 - 16398123
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaa 215  Q
    ||||||||||||||||||| ||||||  ||||||||||||||    
T  16398164 ttcagcttattttcataagttctccaacataacttatgaaaa 16398123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 3227703 - 3227751
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagttta 222  Q
    ||||||||||||||| || ||||||| |||| |||||||||||| ||||    
T  3227703 ttcagcttattttcaaaatctctccaaaatagcttatgaaaacaattta 3227751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 6993747 - 6993787
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||| || ||| ||||||||||||    
T  6993747 agcttattttcataagctctcaagcatagcttatgaaaaca 6993787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 8017477 - 8017417
Alignment:
Q  181 tattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    |||||||||||| ||||||  ||| ||||||||||||||||| | ||| ||||| ||||||    
T  8017477 tattttcataagttctccaagatagcttatgaaaacagtttacagcttatatgaaaataat 8017417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 13736319 - 13736363
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||||||||| || ||| ||||||||||||| |||||    
T  13736319 ttattttcataagctctctagtatagcttatgaaaacagcttata 13736363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 18179260 - 18179320
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||||| |||| ||||||| ||| ||||||||| ||| ||||| ||| |||||    
T  18179260 ttcagcttattttcgtaagttctccaggatagcttatgaaagcagcttatagcttatatga 18179320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 33391079 - 33391027
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataac 226  Q
    |||||||||||| || ||||| || |||||||| ||||||||||| |||||||    
T  33391079 ttcagcttatttccacaagctttcaagaataacatatgaaaacagcttataac 33391027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 34339956 - 34339889
Alignment:
Q  174 ttcagcttattttcataagctctcca-gaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    |||||||||||||| ||||||||||| ||||| |||||||||| |||||||| ||| || || ||||||    
T  34339956 ttcagcttattttcttaagctctccaagaata-cttatgaaaatagtttataccttatacgaaaataat 34339889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 36395307 - 36395343
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttat 210  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  36395307 ttcagctaattttcataagctctccagaatagcttat 36395343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 39983392 - 39983332
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||| |||||||||| |||||||||| ||| ||||||||||||  ||||| ||| |||||    
T  39983392 ttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatatga 39983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 40435015 - 40435051
Alignment:
Q  188 ataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  40435015 ataagctctccagtataacttatgaaaacagcttata 40435051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 43600752 - 43600708
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagttt 221  Q
    |||||| |||||||| |||| || |||||||||||||||||||||    
T  43600752 agcttagtttcataaactcttcataataacttatgaaaacagttt 43600708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 18628563 - 18628617
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  18628563 ttcagcttatttccataagctctccaagataacttatgaaaacagtttataactt 18628617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 8468998 - 8468955
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||| |||||||||||||||||| |||||||||||||||||||    
T  8468998 ttcagattattttcataagctctctagaataacttatgaaaaca 8468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 4191767 - 4191721
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagttt 221  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  4191767 tcagcttatttccatacgctctccaggataacttatgaaaacagttt 4191721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 7694030 - 7694080
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||| ||||| |||||||| ||||||||||||||||| |||||    
T  7694030 ttcagcttatttccataaactctccaggataacttatgaaaacagcttata 7694080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 27721767 - 27721717
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||| |||||    
T  27721767 ttcagcttattttcgcaagctctccaggataacttatgaaaacagcttata 27721717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 53673678 - 53673728
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||||||||    
T  53673678 ttcagcttatttacataagctctccaagatagcttatgaaaacagtttata 53673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 36722692 - 36722749
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||||||||||| ||| ||||||||| ||||||  ||||||||| |||||    
T  36722692 agcttattttcataagctcttcaggataacttatcaaaacaacttataacttatatga 36722749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 43824333 - 43824273
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||| ||||| |||||||| ||||| || ||||||||| |||||    
T  43824333 ttcagcttatttccataagctttccaggataacttacgaaaaaagcttataacttatatga 43824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 11802584 - 11802541
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||    
T  11802584 ttcagcttattctcataagctctccataatagcttatgaaaaca 11802541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 825510 - 825552
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaac 216  Q
    ||||||||||||||||||| |||||| |||| |||||||||||    
T  825510 ttcagcttattttcataagttctccaaaatagcttatgaaaac 825552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 10194716 - 10194754
Alignment:
Q  176 cagcttattttcataagctctccagaataacttatgaaa 214  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  10194716 cagcttattttcataagctctccaagataacttatgaaa 10194754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 43932485 - 43932435
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||| |||||||||| ||| ||| |||||||||||||||||| ||||||||    
T  43932485 ttcatcttattttcacaagttcttcagaataacttatgaaaatagtttata 43932435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 47800673 - 47800623
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||||| ||  ||| ||||||||||||| |||||    
T  47800673 ttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 55414440 - 55414490
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||| |||||||||||||| ||||||  |||||||||||||||| ||||||    
T  55414440 ttcaacttattttcataagttctccaagataacttatgaaaacaatttata 55414490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 24091491 - 24091446
Alignment:
Q  196 tccagaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    ||||| ||||||||||||||||||||||| ||| ||||| ||||||    
T  24091491 tccaggataacttatgaaaacagtttatagcttatatgaaaataat 24091446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 4500896 - 4500848
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagttta 222  Q
    |||||||||||||||||| ||||||| |||| ||| |||||||| ||||    
T  4500896 ttcagcttattttcataatctctccaaaatagcttttgaaaacaattta 4500848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 9908106 - 9908074
Alignment:
Q  202 ataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||||||||||||||||||| |||||    
T  9908106 ataacttatgaaaacagtttataacttatatga 9908074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 11158377 - 11158437
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| || |||||||| |  ||| ||||||||||||  |||||||||||||||    
T  11158377 ttcagcttatttccacaagctctctaagatagcttatgaaaacaacttataacttgtatga 11158437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 29601028 - 29601088
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||||||||||| |||| || ||| | ||||||||||| ||||| |||| ||||    
T  29601028 ttcagcttattttcataagttctctaggatagcatatgaaaacagattatagcttgcatga 29601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 50004164 - 50004208
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    ||||||||||||||||||| ||||||  |||||||| ||||||||    
T  50004164 ttcagcttattttcataagttctccaagataacttaggaaaacag 50004208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 56480392 - 56480344
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||||||||||||||||  |||  |||||||||||| |||||||||    
T  56480392 ttattttcataagctctccaagatagtttatgaaaacagcttataactt 56480344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 35179189 - 35179135
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  35179189 ttcagcttattttcataagttctccataataacttatgaaaacagcttataactt 35179135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 11639439 - 11639486
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  11639439 agcttattttcataagctctctagaataacttatgcaaacagtttata 11639486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 27807145 - 27807105
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaa 215  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  27807145 tcagcttattttcataagctctccagaataacttttgaaaa 27807105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 41853847 - 41853787
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||| ||||||||| |||||||||| ||||||||||| |||||| | |||||||||||||    
T  41853847 ttcagtttattttcacaagctctccaaaataacttatggaaacagctcataacttgtatga 41853787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 4700086 - 4700136
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||||||||| |||  |||| |||||||||||||    
T  4700086 ttcagcttattttcataagctctccaggatagtttataaaaacagtttata 4700136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 32113708 - 32113658
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||  ||||||  |||||||||||||||||||||||    
T  32113708 ttcagcttattttcataaaatctccaacataacttatgaaaacagtttata 32113658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 51929799 - 51929847
Alignment:
Q  178 gcttattttcataagctctccagaataacttatgaaaacagtttataac 226  Q
    |||||||| ||||||||||| |||||| ||||||||||||| |||||||    
T  51929799 gcttatttccataagctctctagaatagcttatgaaaacagcttataac 51929847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 15361763 - 15361696
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    ||||||||| || ||||| ||||| |||||| ||||||||||||| ||||| ||| ||||| ||||||    
T  15361763 ttcagcttaattccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaaaataat 15361696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 25479631 - 25479588
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||||||||| || ||| ||||||||||||    
T  25479631 ttcagcttattttcataagctctctaggatagcttatgaaaaca 25479588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 51957418 - 51957457
Alignment:
Q  189 taagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  51957418 taagttctccagaataacttatgaaaacaatttataactt 51957457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 7137018 - 7137068
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||| |||||    
T  7137018 ttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 7472361 - 7472311
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||||||||  ||| |||||| |||||| |||||    
T  7472361 ttcagcttattttcataagctctccaagatagcttatggaaacagcttata 7472311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 16322896 - 16322834
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaata 239  Q
    ||||||||| |||||||||| || |||| | ||||||||||| ||||||||| ||||| ||||    
T  16322896 agcttatttccataagctcttcaaaatagcctatgaaaacagcttataacttctatgaaaata 16322834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 26916249 - 26916215
Alignment:
Q  176 cagcttattttcataagctctccagaataacttat 210  Q
    |||||||||| ||||||||||||||||||||||||    
T  26916249 cagcttatttccataagctctccagaataacttat 26916215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 44422747 - 44422689
Alignment:
Q  176 cagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||||||||||||||||| ||| ||||| |||| || ||||| ||| |||||    
T  44422747 cagcttattttcataagctctccaggatagcttataaaaatagcttatagcttatatga 44422689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 1565152 - 1565197
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagt 219  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||    
T  1565152 ttcagcttattttcataggctctccaagataacttatgcaaacagt 1565197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 4576855 - 4576798
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgta 231  Q
    ||||||||||||||||||| | | ||  ||| ||||||||||||| ||||||||||||    
T  4576855 ttcagcttattttcataagttattcaatatagcttatgaaaacagcttataacttgta 4576798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 10199428 - 10199469
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaa 215  Q
    |||||||||||||||||||||||| | |||| ||||||||||    
T  10199428 ttcagcttattttcataagctctctaaaatagcttatgaaaa 10199469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 28482256 - 28482313
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||| |||||||||||  ||||||||| ||||||| ||||| ||| |||||    
T  28482256 agcttattttcgtaagctctccaagataacttataaaaacagcttatagcttatatga 28482313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 37241844 - 37241885
Alignment:
Q  176 cagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||||||| || ||| ||||||||||||    
T  37241844 cagcttattttcataagctctctaggatatcttatgaaaaca 37241885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 38867854 - 38867899
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagttta 222  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||    
T  38867854 agcttattttcataagttcttcaagataacttatgaaaacagttta 38867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 48282175 - 48282130
Alignment:
Q  183 ttttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||||||||||||| ||  ||||||||||||||||||||| |||||    
T  48282175 ttttcataagctcttcaacataacttatgaaaacagtttaaaactt 48282130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 36581620 - 36581588
Alignment:
Q  202 ataacttatgaaaacagtttataacttgtatga 234  Q
    |||| ||||||||||||||||||||||||||||    
T  36581620 ataatttatgaaaacagtttataacttgtatga 36581588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 37593704 - 37593744
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaa 214  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  37593704 ttcagcttattttcataagctcttcaaaatagcttatgaaa 37593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 38651454 - 38651494
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||| ||||||||||||| ||| ||||||||||||    
T  38651454 agcttatttttataagctctccaggatagcttatgaaaaca 38651494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 39347987 - 39348051
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaat 238  Q
    |||||||||||| |||||||| | ||| |||  |||||||||||  ||||| |||||||||||||    
T  39347987 ttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagcttgtatgagaat 39348051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 37588380 - 37588440
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||| ||| |||||    
T  37588380 ttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatga 37588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 35553208 - 35553268
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||||||||||||| | |||||||| |||||||| ||| |||||    
T  35553208 ttcagcttatttccataagctctccagaatagcgtatgaaaatagtttatagcttatatga 35553268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 37526219 - 37526279
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||||||||||| ||||||||||||||  ||||| ||| |||||    
T  37526219 ttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagcttatatga 37526279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 27565370 - 27565413
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  27565370 ttcagcttattttcataagctctccagaatatcttattaaaaca 27565413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 36639567 - 36639512
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||||||||| ||  ||| |||||||||||||| ||||||||||||||    
T  36639567 cttattttcataagctcttcaagatagcttatgaaaacagtctataacttgtatga 36639512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 1550947 - 1550889
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtat 232  Q
    |||| |||||| ||||||||||| ||| ||||||||||||||||| ||||| |||||||    
T  1550947 ttcatcttattgtcataagctcttcagtataacttatgaaaacagcttatagcttgtat 1550889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 7319029 - 7319079
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagtttataa 225  Q
    |||||||||||||||||| ||||||  ||| ||||||||||||||||||||    
T  7319029 tcagcttattttcataagttctccaagatagcttatgaaaacagtttataa 7319079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 3970700 - 3970740
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaa 214  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  3970700 ttcagcttattttcataagctctccagtatagcttatgaaa 3970740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 18875411 - 18875351
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||| ||| ||| |||||||||||||| ||| ||||| ||||||| |||||||||||||||    
T  18875411 ttcaacttgtttccataagctctccaggatatcttattaaaacagcttataacttgtatga 18875351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 36638797 - 36638753
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    |||||||||||| ||||||||||| || |||||||||||||||||    
T  36638797 ttcagcttatttccataagctctctaggataacttatgaaaacag 36638753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 8651373 - 8651431
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatg 233  Q
    |||||| ||||| ||||||||| |||||||| ||||||||||||||||||| ||| ||||    
T  8651373 ttcagcatatttccataagctc-ccagaatagcttatgaaaacagtttatagcttatatg 8651431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 15074769 - 15074812
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||    
T  15074769 ttcagcttatttccataagctttccagtataacttatgaaaaca 15074812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 36774727 - 36774774
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagttt 221  Q
    |||||||||||| |||||||||||||| ||| ||||| ||||||||||    
T  36774727 ttcagcttatttccataagctctccaggatagcttataaaaacagttt 36774774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 3504794 - 3504760
Alignment:
Q  174 ttcagcttattttcataagctctccagaataactt 208  Q
    |||||||||||| ||||||||||||||||||||||    
T  3504794 ttcagcttatttacataagctctccagaataactt 3504760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 3977359 - 3977309
Alignment:
Q  173 cttcagcttattttcataagctctccagaataacttatgaaaacagtttat 223  Q
    |||||||||||||||||||  |||||| || ||||||||||||||| ||||    
T  3977359 cttcagcttattttcataatttctccacaacaacttatgaaaacagcttat 3977309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 6582864 - 6582906
Alignment:
Q  186 tcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||||||| ||| | |||||||||||||||||||||||||    
T  6582864 tcataagctctgcaggaaaacttatgaaaacagtttataactt 6582906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 41957471 - 41957525
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||| |||||||||||||| |||| || ||| ||||||||||||| |||||||||    
T  41957471 ttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataactt 41957525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 4014444 - 4014493
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttat 223  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||| ||||    
T  4014444 ttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 10125738 - 10125779
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaa 215  Q
    ||||||||||||||||||||||||||   |||||||||||||    
T  10125738 ttcagcttattttcataagctctccatggtaacttatgaaaa 10125779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 17258903 - 17258952
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttat 223  Q
    ||||||||||||||||||||||| ||| |||  |||||||||||| ||||    
T  17258903 ttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 37690656 - 37690717
Alignment:
Q  174 ttcagcttattttcataagctctccagaataac-ttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||  ||||| ||| |||||    
T  37690656 ttcagcttatttccataagctctccataataactttatgaaaacaacttatagcttatatga 37690717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 7319456 - 7319396
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||||| ||||| ||||||  ||| |||| |||||||||||||| ||| |||||    
T  7319456 ttcagcttatttttataagttctccaagatagcttacgaaaacagtttatagcttatatga 7319396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 13604869 - 13604913
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||    
T  13604869 ttcaacttattttcataagctcttcaagataacttatgaaaacag 13604913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 16328915 - 16328856
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| ||||||||||||||  || |||| ||||||||||||||| || |||||    
T  16328915 ttcagcttatttccataagctctccag-gtagcttacgaaaacagtttataatttatatga 16328856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 16863830 - 16863770
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||||||| ||| |  |||  |||||| |||||||||| |||||||||||||||    
T  16863830 ttcagcttattttcacaagttaaccatgataactgatgaaaacagcttataacttgtatga 16863770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 14548741 - 14548801
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||| ||| |||||    
T  14548741 ttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatga 14548801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 34254828 - 34254878
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  34254828 ttcagcttatttacataagttctccagaatagcttatgaaaatagtttata 34254878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 40665479 - 40665425
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||  |||||||||    
T  40665479 ttcagcttatttttataagctctccaagataacttatgaaaacatcttataactt 40665425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 48286831 - 48286889
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatg 233  Q
    |||||||||||  ||||||||| ||  ||||||||||||||||||||||||||| ||||    
T  48286831 tcagcttatttctataagctctacatgataacttatgaaaacagtttataacttatatg 48286889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 2719517 - 2719468
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||||||||| ||||||  ||| |||||||||||||||||||    
T  2719517 tcagcttattttcataagttctccaagatagcttatgaaaacagtttata 2719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 41633410 - 41633361
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttat 223  Q
    |||||||||||||||||||||||||| |||| || |||||||||| ||||    
T  41633410 ttcagcttattttcataagctctccaaaatagctgatgaaaacagcttat 41633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 3845582 - 3845626
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    ||||||||||||||||||| ||||||  |||||||||||||||||    
T  3845582 ttcagcttattttcataagttctccaagataacttatgaaaacag 3845626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 8933834 - 8933794
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  8933834 agcttattttcataagctctccaagataacttatgaaaaca 8933794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 1816633 - 1816590
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  1816633 ttcagcttattttgataagctctccagtatagcttatgaaaaca 1816590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 44284100 - 44284147
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagttt 221  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  44284100 ttcagcttatttctataagctctccaggatagcttatgaaaacagttt 44284147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 20502088 - 20502138
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||| ||||||||||| ||| ||| ||||||||||||| |||||    
T  20502088 ttcagcttattctcataagctcttcaggatagcttatgaaaacagcttata 20502138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 24158528 - 24158577
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||| |||||||||||||| ||| ||||||||||||| |||| ||||    
T  24158528 cttatttccataagctctccaggatagcttatgaaaacagcttattactt 24158577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 48807758 - 48807693
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaata 239  Q
    |||||||||||||||   |||||| |||||||||||||||||||  ||||| ||| ||||| ||||    
T  48807758 ttcagcttattttcactggctctctagaataacttatgaaaacaacttatagcttctatgaaaata 48807693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 21661560 - 21661508
Alignment:
Q  178 gcttattttcataagctctccagaataacttatgaaaacagtttataacttgt 230  Q
    ||||||||| |||||||||| ||||||  ||||||||||| |||| |||||||    
T  21661560 gcttatttttataagctctctagaatagattatgaaaacaatttagaacttgt 21661508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 24280761 - 24280701
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||| |||||||||||||||||||||  ||| ||||||| ||||| ||||| |||| ||||    
T  24280761 ttcaacttattttcataagctctccatgatagcttatgacaacagcttatagcttgaatga 24280701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 24887303 - 24887347
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    |||||||||||  |||||||||||||| ||| |||||||||||||    
T  24887303 ttcagcttattcccataagctctccaggatagcttatgaaaacag 24887347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 48528606 - 48528562
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    ||||||||||||  |||| |||||||||||| |||||||||||||    
T  48528606 ttcagcttatttctataaactctccagaatagcttatgaaaacag 48528562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 51510216 - 51510256
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||| |||||||||||||  ||||||||||||||||    
T  51510216 agcttatttccataagctctccacgataacttatgaaaaca 51510256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 44822009 - 44821955
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||    
T  44822009 ttcaacttattttcataagttctccagaatagcttatgaaaacagcttataactt 44821955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 7244730 - 7244683
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagttt 221  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  7244730 ttcagcttattttcataagctctccaatatagcttatgaaaacagttt 7244683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 21453344 - 21453281
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaa 237  Q
    |||||||||| ||||| ||||||| || ||| ||||||||||||||||||| ||| ||||||||    
T  21453344 ttcagcttatcttcattagctctctaggatagcttatgaaaacagtttatagcttatatgagaa 21453281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 6601416 - 6601367
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||| |||||    
T  6601416 tcagcttattttcataagcactccagaatagcttataaaaacagcttata 6601367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 24363621 - 24363686
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaata 239  Q
    |||||||||||| ||||| |||||||| ||| ||||||||||||  ||||||| ||||||| ||||    
T  24363621 ttcagcttatttccataacctctccaggatagcttatgaaaacaacttataacctgtatgaaaata 24363686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 30723065 - 30723117
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttataacttgtat 232  Q
    ||||||||| ||||||||||| ||| |||||||||| || |||||||||||||    
T  30723065 ttattttcaaaagctctccaggatagcttatgaaaatagcttataacttgtat 30723117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 33709498 - 33709438
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||| ||||||||||| |  |||| |||||||||||||||||||||||||| ||| |||||    
T  33709498 ttcaacttattttcatcaagtctcgagaataacttatgaaaacagtttatagcttatatga 33709438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 29363562 - 29363515
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttataact 227  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||||||||    
T  29363562 ttatttccataagctctccaggataacttatgataacagcttataact 29363515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 39506006 - 39505963
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||    
T  39506006 ttcagcttatttccataaactctccagaatagcttatgaaaaca 39505963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 40252128 - 40252179
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagtttataac 226  Q
    |||||||||||||||||| ||||||  |||||||||||||| || |||||||    
T  40252128 tcagcttattttcataagttctccaagataacttatgaaaagagcttataac 40252179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 46082086 - 46082024
Alignment:
Q  174 ttcagcttattttcataagctctccagaataac--ttatgaaaacagtttataacttgtatga 234  Q
    ||||||||||||||||||||||||||||||| |   ||||||||||  ||||||||| |||||    
T  46082086 ttcagcttattttcataagctctccagaatagcgtctatgaaaacaacttataacttatatga 46082024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 514817 - 514767
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||| | ||||||||||| ||| ||||||||||||| |||||    
T  514817 ttcagcttattttgacaagctctccaggatagcttatgaaaacagcttata 514767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 25596083 - 25596033
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||| |||||||||||||||||||||  ||| |||||||||| ||||||||    
T  25596083 ttcaacttattttcataagctctccaagatagcttatgaaaagagtttata 25596033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 27517314 - 27517348
Alignment:
Q  187 cataagctctccagaataacttatgaaaacagttt 221  Q
    |||||||||||||| ||||||||||||||||||||    
T  27517314 cataagctctccaggataacttatgaaaacagttt 27517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 39542325 - 39542363
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  39542325 cttattttcataagctctccaggataacttatggaaaca 39542363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 47559629 - 47559671
Alignment:
Q  182 attttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||| |||||| |||||||||||||||||| |||||    
T  47559629 attttcataagttctccaaaataacttatgaaaacagcttata 47559671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 25507399 - 25507334
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaata 239  Q
    ||||||||| ||| ||||||| || |||||||||||||||||||  ||||| ||| ||||| ||||    
T  25507399 ttcagcttactttaataagctttctagaataacttatgaaaacaacttatagcttatatgaaaata 25507334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 28691856 - 28691909
Alignment:
Q  175 tcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||| | ||||||||    
T  28691856 tcagtttattttcataagatctccaggatagcttatgaaaacaatgtataactt 28691909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 46104589 - 46104630
Alignment:
Q  176 cagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  46104589 cagcttattttcataagctcttcagcatagcttatgaaaaca 46104630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 48917368 - 48917409
Alignment:
Q  176 cagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaaca 48917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 19530185 - 19530229
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttat 223  Q
    ||||||| |||||||  |||| |||||||||||||||||||||||    
T  19530185 cttatttccataagccatccaaaataacttatgaaaacagtttat 19530229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 27378848 - 27378892
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    ||||| ||||||||||||||||||||| |||  ||||||||||||    
T  27378848 ttcagtttattttcataagctctccaggatagtttatgaaaacag 27378892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 33645987 - 33646030
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||| ||||||||||||||| || |||||||||||||||||||    
T  33645987 ttatttccataagctctccaga-tagcttatgaaaacagtttata 33646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 40689009 - 40689073
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    |||||||||||||||| | ||||| ||| |||||||| |||| ||||| ||| ||||| ||||||    
T  40689009 agcttattttcataagttatccaggatagcttatgaacacagcttatagcttatatgaaaataat 40689073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 47941367 - 47941323
Alignment:
Q  180 ttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||| |||||| | ||| |||||||||||||||||||    
T  47941367 ttattttcataaactctccgggatagcttatgaaaacagtttata 47941323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 31862543 - 31862478
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaata 239  Q
    |||||||||||||||||||||||| || ||||||||||||||||  ||||| ||| || |||||||    
T  31862543 ttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaata 31862478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 35220746 - 35220791
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagttta 222  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||    
T  35220746 agcttatttttataagctctccagaatagcttatgaaaacagttta 35220791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 11795142 - 11795082
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| ||||||||||||| |||| ||||||||| ||| ||||||||| |||||    
T  11795142 ttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatatga 11795082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 20672800 - 20672753
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagttt 221  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  20672800 ttcagcttattttcataagctctccaggatagcttataaaaacagttt 20672753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 27028881 - 27028831
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| |||||    
T  27028881 ttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 27754454 - 27754412
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaac 216  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  27754454 ttcagcttattttcataagctctccaaaatagcttatgaaaac 27754412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 34551166 - 34551116
Alignment:
Q  178 gcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||||||||||||||||||| |||||||| |||||||  |||||||||    
T  34551166 gcttattttcataagctctccaggataacttaagaaaacaacttataactt 34551116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 12361242 - 12361182
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||| ||||||| ||| |||||||| ||||||||||||||||||| ||||| ||| |||||    
T  12361242 ttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatga 12361182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 44236843 - 44236887
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||    
T  44236843 ttcagcttattttcataagctctccaatatagcttatgaaaacag 44236887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 9700051 - 9700000
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataa 225  Q
    |||| |||||||||||||||||||  ||||||| ||||||||||| ||||||    
T  9700051 ttcaccttattttcataagctctcttgaataacatatgaaaacagcttataa 9700000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 10075574 - 10075625
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    ||||||||||||||||||||| || ||| |||||||||| || |||||||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttataactt 10075625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 13652260 - 13652205
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||| | |||||||||||||||| ||||| |||||| |||||||||| |||||    
T  13652260 cttatttccttaagctctccagaatagcttataaaaacaatttataacttatatga 13652205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 13710903 - 13710848
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    ||||||| | |||||||||||||||| ||||| |||||| |||||||||| |||||    
T  13710903 cttatttccttaagctctccagaatagcttataaaaacaatttataacttatatga 13710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 39268524 - 39268591
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataat 241  Q
    ||||| |||||| ||||||||||| |||| | ||||||||||||| || |||||| ||||| ||||||    
T  39268524 ttcagtttatttccataagctctctagaaaagcttatgaaaacagcttttaacttatatgaaaataat 39268591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 1433598 - 1433556
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaac 216  Q
    |||| |||||||||||||||||||||| ||| |||||||||||    
T  1433598 ttcaacttattttcataagctctccaggatagcttatgaaaac 1433556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 10923641 - 10923603
Alignment:
Q  179 cttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||||||||||| || |||||||||    
T  10923641 cttattttcataagctctccagaatagctaatgaaaaca 10923603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 11494196 - 11494146
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||||||||||||||||| ||  ||| |||||||||| ||||||||    
T  11494196 ttcagcttattttcataagctcttcaagatagcttatgaaaatagtttata 11494146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 28769359 - 28769409
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||| ||||| ||||||| |||| ||||||||||||| |||||    
T  28769359 ttcagcttatttccataaactctccaaaatagcttatgaaaacagcttata 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 40157585 - 40157519
Alignment:
Q  145 ttatgatatgtgtataagttgtcttcaacttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||| |||||||||||| |      ||||||||||| ||||||||| ||||||| ||||||||||    
T  40157585 ttatgatatgtgaataagttgtcttta------gcttattttcacaagctctccggaataacatatgaaaaca 40157519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 25097427 - 25097387
Alignment:
Q  183 ttttcataagctctccagaataacttatgaaaacagtttat 223  Q
    |||||||||||||||||| ||| ||||||||||||| ||||    
T  25097427 ttttcataagctctccaggatagcttatgaaaacagcttat 25097387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 32387075 - 32387116
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaa 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  32387075 ttcagcttattttcataagctcttcagaataacttatgaaaa 32387116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 1275199 - 1275139
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||    
T  1275199 ttcagcttatttccataagctctccaggataacatatgaaaacagcttatagcttatatga 1275139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 33787765 - 33787825
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||| ||||| |||||||||||||  ||||||||||||||||| ||||||||| |||||    
T  33787765 ttcagcctatttccataagctctccaagataacttatgaaaacagcttataacttatatga 33787825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 32386583 - 32386626
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaaca 217  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  32386583 ttcagcttattttcataagctctccaggataactaatgaaaaca 32386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 3168281 - 3168343
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgaga 236  Q
    |||||||||||| | |||||||||||| ||| |||| |||||||||||||| ||| |||||||    
T  3168281 ttcagcttatttccttaagctctccaggatagcttaagaaaacagtttatagcttatatgaga 3168343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 28641772 - 28641819
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    |||||||||||||||||||| ||||||| ||  |||||||||||||||    
T  28641772 agcttattttcataagctctgcagaatagctattgaaaacagtttata 28641819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 8364996 - 8365050
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataactt 228  Q
    |||||||||||||||| || || |||  ||| |||||||||||||||||||||||    
T  8364996 ttcagcttattttcatcagttcaccatgatagcttatgaaaacagtttataactt 8365050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 28088245 - 28088311
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatgagaataatct 243  Q
    ||||||||| ||| |||||||||  ||| ||||||||||||||||||| ||| ||||| || |||||    
T  28088245 agcttatttccatgagctctccatgatagcttatgaaaacagtttatagcttatatgaaaacaatct 28088311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 32386126 - 32386176
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttata 224  Q
    ||||||||| ||||||||||| ||||| |||||| |||||||||| |||||    
T  32386126 ttcagcttactttcataagctttccaggataactaatgaaaacagcttata 32386176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 4247081 - 4247141
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||| |||||||||||  || || | ||||||||||||||| ||||||||| |||||    
T  4247081 ttcagcttgttttcataagccttctaggacaacttatgaaaacagcttataacttatatga 4247141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 6647437 - 6647385
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataac 226  Q
    |||| ||||||||||||||||||| |  ||| ||||||||||||| |||||||    
T  6647437 ttcaacttattttcataagctctctaagatagcttatgaaaacagattataac 6647385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 31812036 - 31812076
Alignment:
Q  177 agcttattttcataagctctccagaataacttatgaaaaca 217  Q
    |||||||||||||||||||||||  ||| ||||||||||||    
T  31812036 agcttattttcataagctctccaagatagcttatgaaaaca 31812076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 32171403 - 32171447
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacag 218  Q
    |||||||||||| |||||||| ||||| |||||| ||||||||||    
T  32171403 ttcagcttatttccataagctatccaggataactaatgaaaacag 32171447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 32171517 - 32171457
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||||||||||| |||||||||||||| ||| ||||  ||||||| ||||| ||| |||||    
T  32171517 ttcagcttatttccataagctctccaggataccttactaaaacagattatagcttatatga 32171457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 32848616 - 32848676
Alignment:
Q  174 ttcagcttattttcataagctctccagaataacttatgaaaacagtttataacttgtatga 234  Q
    |||| |||||| ||||||||||||||  ||||| |||||||| | |||||||||| |||||    
T  32848616 ttcaacttattatcataagctctccaagataacatatgaaaaaaatttataacttatatga 32848676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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