View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_36 (Length: 247)
Name: NF8672_high_36
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 39245398 - 39245610
Alignment:
| Q |
17 |
agacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
116 |
Q |
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| T |
39245398 |
agacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
39245497 |
T |
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| Q |
117 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccac |
216 |
Q |
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| T |
39245498 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccac |
39245597 |
T |
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| Q |
217 |
caattgtaaaagg |
229 |
Q |
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| T |
39245598 |
caattgtaaaagg |
39245610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 39251420 - 39251613
Alignment:
| Q |
35 |
ttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataacc |
134 |
Q |
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| T |
39251420 |
ttaaagggcttccagaaggtaatctatgtctataaagtggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaagatggttggaatcccataacc |
39251519 |
T |
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| Q |
135 |
aagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaaagg |
229 |
Q |
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| T |
39251520 |
aagggc-aaaccaacattgtcttgtatgtagactaatcctgtttcggctaaaatgcctccagttataatgcagaacacccaccaattgaaaaagg |
39251613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 39260994 - 39261201
Alignment:
| Q |
17 |
agacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || || |||| |||||||||| | |||| |||||||||||| |
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| T |
39260994 |
agacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatat |
39261093 |
T |
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| Q |
117 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccac |
216 |
Q |
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| T |
39261094 |
ggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaattaaaatgtaaaacacccac |
39261193 |
T |
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| Q |
217 |
caattgta |
224 |
Q |
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| T |
39261194 |
caattgta |
39261201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 39239575 - 39239722
Alignment:
| Q |
17 |
agacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
116 |
Q |
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||||||||| ||| || |||| ||| || || | ||||||||| ||||||||| ||||||||| || |||||||||||| ||||||| |||| || |
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| T |
39239575 |
agacttgaagcatccttgttatagggctgcctggaggcaatttgtgtctataatatggtgttcctaataaaaacaccaatattgaaaatgcaaggccaat |
39239674 |
T |
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| Q |
117 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgta |
164 |
Q |
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|||||||| ||||| ||||| | |||||| ||||||||||||||| |
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| T |
39239675 |
ggttggaaggccatatccaagttcccaaccaatattgtcttgtatgta |
39239722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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