View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_43 (Length: 222)
Name: NF8672_high_43
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6886225 - 6886446
Alignment:
| Q |
1 |
agttctgagtttattaattcgagtgaaattgaactgtgatttttaaagtacgatcttaattaaaagaatgtgaccaatcaaattttaaacaaaatttaat |
100 |
Q |
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| T |
6886225 |
agttttgagtttattggttcgagtgaaattgaactgtgatttttaaagtacaatcttaattaaaagaatgtgaccagtcaaattttaaacaaaatttagt |
6886324 |
T |
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| Q |
101 |
attcaacgaaactgatgaatatagttatcaaaaaagaaattttttaatttccaatcacgtgcaaaattcagcaaatattaacaaacactcaaatcgaaaa |
200 |
Q |
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| T |
6886325 |
attcaacgaaactgatgaatatagttatcaaaaaagaaattttttaatttccaatcacgtgcaaaattcagcaaatattaacaaacactcaaatcgaaaa |
6886424 |
T |
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| Q |
201 |
aatgatttcctaactccctttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6886425 |
aatgatttcctaactccctttc |
6886446 |
T |
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