View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_high_8 (Length: 417)
Name: NF8672_high_8
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_high_8 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Original strand, 2831110 - 2831507
Alignment:
| Q |
11 |
catcacttttctccttgacaagatcatccaatgctttttgatcttcatcatcacttgtttcacattgtgagagtttcatctctaactcttgggaattttt |
110 |
Q |
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| T |
2831110 |
catcacttttctccttgacaagatcatccaatgctttttgatcttcatcatcacttgtttcacattgtgagagtttcatctctaactcttgggaattttt |
2831209 |
T |
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| Q |
111 |
attgtgttcctgtccattggaatgtttagacatattcatatttttctgctccaacatctcttccaggtcctgcacggcaagaaccaattcagcatttgat |
210 |
Q |
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| T |
2831210 |
attgtgttcctgtccattggaatgtttagacatattcatatttttctgctccaacatctcttccaggtcctgcacggcaagaaccaattcagcatttgat |
2831309 |
T |
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| Q |
211 |
tcttgcatcttttttaactgtaatcggagatttgcattcgtgtctttctcataattcaattcttgtctgatttcttcgacaaaggcatgatgatctccac |
310 |
Q |
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| T |
2831310 |
tcttgcatcttttttaactgtaatcggagatttgcattcgtgtctttctcataattcaattcttgtctgatttcttcgacaaaggcatgatgatctccac |
2831409 |
T |
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| Q |
311 |
tttccaactgtgacctgtttctcactttggcatcgtccatgcgtttgtggaaagacctgacattgtcacattctgtcttgagtgcgtccctttcatct |
408 |
Q |
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| T |
2831410 |
tttccaactgtgacctgtttctcactttggcatcgtccatgcgtttgtggaaagacctgacattgtcacattctgtcttgagtgcgtccctttcatct |
2831507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 3895 - 3757
Alignment:
| Q |
149 |
tatttttctgctccaacatctcttccaggtcctgcacggcaagaaccaattcagcatttgattcttgcatcttttttaactgtaatcggagatttgcatt |
248 |
Q |
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| T |
3895 |
tatttttctgctctaacattgcgtcgaggtcctgaacagcaagaactagttcagcatttgattcctgtgtcttatttaactgtagtctgagatttgcatt |
3796 |
T |
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| Q |
249 |
cgtgtctttctcataattcaattcttgtctgatttcttc |
287 |
Q |
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| T |
3795 |
catgtccttctcgtgattcaattcttgtctgatttcttc |
3757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 40799267 - 40799129
Alignment:
| Q |
149 |
tatttttctgctccaacatctcttccaggtcctgcacggcaagaaccaattcagcatttgattcttgcatcttttttaactgtaatcggagatttgcatt |
248 |
Q |
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| T |
40799267 |
tatttttctgctctaacattgcgtcgaggtcctgaacagcaagaactagttcagcatttgattcctgtgtcttatttaactgtagtctgagatttgcatt |
40799168 |
T |
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| Q |
249 |
cgtgtctttctcataattcaattcttgtctgatttcttc |
287 |
Q |
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| T |
40799167 |
catgtccttctcgtgattcaattcttgtctgatttcttc |
40799129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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