View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8672_low_1 (Length: 615)

Name: NF8672_low_1
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8672_low_1
NF8672_low_1
[»] chr5 (11 HSPs)
chr5 (1-607)||(13881063-13881658)
chr5 (8-291)||(13254463-13254759)
chr5 (5-146)||(14367230-14367371)
chr5 (476-607)||(16022434-16022568)
chr5 (475-593)||(14389570-14389688)
chr5 (323-394)||(16022307-16022378)
chr5 (325-403)||(14389758-14389836)
chr5 (194-307)||(14367070-14367184)
chr5 (229-306)||(13878561-13878638)
chr5 (362-406)||(13856744-13856788)
chr5 (124-173)||(13139649-13139698)
[»] chr8 (1 HSPs)
chr8 (555-607)||(26200118-26200170)
[»] chr3 (1 HSPs)
chr3 (529-593)||(48707244-48707308)


Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 607
Target Start/End: Original strand, 13881063 - 13881658
Alignment:
Q  1 cctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13881063 cctctgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaaaat 13881162  T
Q  101 gttgaatgtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatcataaatttagtaaca 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881163 gttgaatgtaagaagggaaaacgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatcataaatttagtaaca 13881262  T
Q  201 caagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggtt 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13881263 caagctggttttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccaccaataggtt 13881362  T
Q  301 aacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881363 aacatgtttgttcagtaacacaagttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaa 13881462  T
Q  401 actccaggagcatatttaaataggcaagagtcaaacttcaaatgnnnnnnnnnnnnnnnnncttgcatattcaagcatattcaatacgatatatgttcta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||                 |||||||||          ||||||||||||||||||||    
T  13881463 actccaggagcatatttaaataggcaagagtcaaacttcaaatgaaaaaaggaaaagaaaacttgcatat----------tcaatacgatatatgttcta 13881552  T
Q  501 atcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatgcatatagttgaggaagcttgatgtcc 600  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || |||    
T  13881553 atcgtgtagaacacaagcattttcgtggtaaactatatcgacaaacttttcaagttttattga-ttttcatatgcatatagttgaagaagcttaatatcc 13881651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 13254463 - 13254759
Alignment:
Q  8 atcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaagatgttgaat 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||  ||| || ||||||    
T  13254463 atcacctccttcattgttaaggggcatgagtctgttatccagaagtatgtgaatgcagtttctggattctccgtgcatggaaagtcggaaaatattgaat 13254562  T
Q  108 gtaagaagggaaaatgtaaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaacgcaatactatc-at------------aaattta 194  Q
    ||||||||||| |  ||||||||||||||||||||||||||| ||||| |||  |||||||||||| ||||| ||||| ||            | ||| |    
T  13254563 gtaagaagggagagcgtaaaacgtaagctatccgattaatatcgattagagttaaaagtgattaaaagcaatgctatctatattttgcaggtaagattca 13254662  T
Q  195 gtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccac 291  Q
    |||||||||||   ||||||  ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||    
T  13254663 gtaacacaagcatgttttatcgtaaaatgagaccatctgcttccaatatctgaactttctgcaatccaatgatagtcgacctaaatgactattccac 13254759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 14367371 - 14367230
Alignment:
Q  5 tgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgtgaatgtagtttctggattccctgtgcatggaaagtaagaagatgttg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| ||||  | |||    
T  14367371 tgcatcacctccttcactgttaaggggcatgagtctgttatccagaagtatgagaacgcagtctctggattccctgtgcatggaaagtcagaaattattg 14367272  T
Q  105 aatgtaagaagggaaaatgtaaaacgtaagctatccgattaa 146  Q
    |||||||||||||| |  |||||  |||||||||||||||||    
T  14367271 aatgtaagaagggatagcgtaaactgtaagctatccgattaa 14367230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 476 - 607
Target Start/End: Original strand, 16022434 - 16022568
Alignment:
Q  476 catattcaatacgatatatgttctaatcgtgtagaa---cacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcata 572  Q
    |||||||||||||||||||||||| ||| || ||||   ||| |||||||  ||| ||||||||||||||||||||| || ||||| ||||||| |||||    
T  16022434 catattcaatacgatatatgttctcatcatgaagaagaacacgagcattttcgtgataaactatatcgacaaactttccaggttttcttgatttctcata 16022533  T
Q  573 tgcatatagttgaggaagcttgatgtccatctcat 607  Q
    ||||||||||||| | |||||  | ||||||||||    
T  16022534 tgcatatagttgaagcagcttattatccatctcat 16022568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 475 - 593
Target Start/End: Complemental strand, 14389688 - 14389570
Alignment:
Q  475 gcatattcaatacgatatatgttctaatcgtgtagaacacaagcatttatgtggtaaactatatcgacaaacttttcaagttttattgatttttcatatg 574  Q
    |||||||||||||  |||||||||| ||| || ||||||| || ||||  ||| ||||||||||| ||||||||| |||| ||| ||||||| ||| |||    
T  14389688 gcatattcaatacagtatatgttctcatcatgaagaacacgagaattttcgtgataaactatatcaacaaactttccaagctttcttgatttgtcaaatg 14389589  T
Q  575 catatagttgaggaagctt 593  Q
    ||||||||||| |||||||    
T  14389588 catatagttgaagaagctt 14389570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 16022307 - 16022378
Alignment:
Q  323 agttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacacta 394  Q
    |||||||||||||| ||||||||||| ||  ||||| | |||||||||||||||||| ||||||||||||||    
T  16022307 agttgaatagacagtgtctttggttttggtgactgcaatgaaataaaccatgttacagaacatataacacta 16022378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 14389836 - 14389758
Alignment:
Q  325 ttgaatagacagcgtctttggtttaggacactgcgaggaaataaaccatgttacaaaacatataacactacttaaaact 403  Q
    ||||||||| || ||||||||||| ||  ||||| |  ||||||||||||||||||||||||||||||| |||||||||    
T  14389836 ttgaatagaaagtgtctttggttttggtgactgcaataaaataaaccatgttacaaaacatataacactccttaaaact 14389758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 14367184 - 14367070
Alignment:
Q  194 agtaacacaagctgattttatgataggatgagaccatctgcttccaatatcttaactttctgcaatcc-aatgatagtcaatctaaacgactattccacc 292  Q
    |||||||||||||| ||||||  ||| ||||||||||||||| ||||||||| ||||| ||| || || |||  || ||||||||||   |||||||||     
T  14367184 agtaacacaagctggttttatattagaatgagaccatctgctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattccact 14367085  T
Q  293 cataggttaacatgt 307  Q
    || ||||||||||||    
T  14367084 cacaggttaacatgt 14367070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 13878561 - 13878638
Alignment:
Q  229 atctgcttccaatatcttaactttctgcaatccaatgatagtcaatctaaacgactattccacccataggttaacatg 306  Q
    ||||||| ||||||||||||||| |||||| ||||||||| |||||||| |   |||||| || || |||||||||||    
T  13878561 atctgctcccaatatcttaacttgctgcaaaccaatgataatcaatctatatacctattcaactcacaggttaacatg 13878638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 406
Target Start/End: Original strand, 13856744 - 13856788
Alignment:
Q  362 gaaataaaccatgttacaaaacatataacactacttaaaactcca 406  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  13856744 gaaataaaccatgttaccaaacatataacactccttaaaattcca 13856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 13139649 - 13139698
Alignment:
Q  124 taaaacgtaagctatccgattaatattgattaaagtctaaagtgattaaa 173  Q
    |||| |||||| |||| |||||||||||||||||||  ||||||||||||    
T  13139649 taaaccgtaagttatctgattaatattgattaaagtgaaaagtgattaaa 13139698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 555 - 607
Target Start/End: Original strand, 26200118 - 26200170
Alignment:
Q  555 ttttattgatttttcatatgcatatagttgaggaagcttgatgtccatctcat 607  Q
    |||| |||||| ||||||||||||||||||| |||| ||| | ||||||||||    
T  26200118 ttttcttgattgttcatatgcatatagttgaagaagtttgttatccatctcat 26200170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 593
Target Start/End: Complemental strand, 48707308 - 48707244
Alignment:
Q  529 taaactatatcgacaaacttttcaagttttattgatttttcatatgcatatagttgaggaagctt 593  Q
    ||||||||||| |||| |||| |||||||| ||||||| |  ||||||| ||||||| |||||||    
T  48707308 taaactatatcaacaagctttccaagttttcttgatttctggtatgcatttagttgaagaagctt 48707244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University