View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_10 (Length: 441)
Name: NF8672_low_10
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 12844131 - 12844553
Alignment:
| Q |
1 |
gaagttgatttggctttcatgaatgtagacatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacg |
100 |
Q |
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| T |
12844131 |
gaagttgatttggctttcatgaatgtagacatggtaagtgcgaaggttttcatatctgccacgacctagatcggtgacggtgtaagccatgagaatgacg |
12844230 |
T |
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| Q |
101 |
gtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccag |
200 |
Q |
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| T |
12844231 |
gtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatc---agaatgaaagaaacggttagcgcaatttggaatttcccgcgccag |
12844327 |
T |
|
| Q |
201 |
gattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcat |
300 |
Q |
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| T |
12844328 |
gattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacag-tttttttatttaatttatattaaaatgtaaaataaagtcgcat |
12844426 |
T |
|
| Q |
301 |
ttacttttaatattggggtttaattgtgtatgannnnnnnnnnnnnnnnngttgtggcaattggctatgtttctatcactatatgttgagcatactacgg |
400 |
Q |
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| T |
12844427 |
ttacttttaatattggggtttaattgtctatgatttttcatttttttttt-ttttggcaattggctatgtttctatcactatatgttgagcatactacgg |
12844525 |
T |
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| Q |
401 |
ttagcacaaggctataggtctttggttc |
428 |
Q |
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| T |
12844526 |
ttagcacaaggctataggtctttggttc |
12844553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 12861386 - 12861065
Alignment:
| Q |
1 |
gaagttgatttggctttcatgaatgtagacatggtaagtgcgaaagttttcatatctgccacgacctagatcggtgaccgtgtaagccatgagaatgacg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861386 |
gaagttgatttggctttcgtgaatgtagacatggtaagtgcgaaggttttcatatctgtcacgacctagatcggtgaccgtgtaagccatgagaatgacg |
12861287 |
T |
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| Q |
101 |
gtgtaaagatttcttttctttggcgcgttcgttcttttctatcactgtaatcagaagaatgaaagaaacggttagcgcaatttggaatttcccgcgccag |
200 |
Q |
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| T |
12861286 |
gtgtaaagatttcttttctttgtcgcgttcgttcttttctatcactgtaatc---agaatgaaagaaacggttagagcaatttggaatttcccgcgccag |
12861190 |
T |
|
| Q |
201 |
gattcatttataaaacggttacaacaaccaatttcttcgtttcagagtttccacagnnnnnnnnatttaatttatattaaaatgtaaaataaagtcgcat |
300 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
12861189 |
gatttatttataaaacggttgtaacaaccaatttcttcgtttcagagtttccacagttttttttatttaatttatattaaaatgtaaaataaagttgcat |
12861090 |
T |
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| Q |
301 |
ttacttttaatattggggtttaatt |
325 |
Q |
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| T |
12861089 |
ttacttttaatattggggtttaatt |
12861065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 12861000 - 12860952
Alignment:
| Q |
382 |
tatgttgagcatactacggttagcacaaggctataggtctttggttctt |
430 |
Q |
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||||||||||||||||||||||||| | |||||||||||| | |||||| |
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| T |
12861000 |
tatgttgagcatactacggttagcaaagggctataggtctctcgttctt |
12860952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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