View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8672_low_14 (Length: 395)

Name: NF8672_low_14
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8672_low_14
NF8672_low_14
[»] chr7 (22 HSPs)
chr7 (8-342)||(6566061-6566381)
chr7 (224-326)||(6647513-6647615)
chr7 (236-325)||(38073658-38073747)
chr7 (224-303)||(21148412-21148491)
chr7 (244-326)||(31418044-31418126)
chr7 (224-316)||(37391045-37391137)
chr7 (237-325)||(21388100-21388188)
chr7 (151-187)||(48723228-48723264)
chr7 (157-199)||(11666707-11666749)
chr7 (224-301)||(39854164-39854241)
chr7 (228-325)||(41888871-41888968)
chr7 (151-187)||(45837939-45837975)
chr7 (144-187)||(7907583-7907626)
chr7 (237-300)||(45278724-45278787)
chr7 (226-276)||(11667045-11667095)
chr7 (151-189)||(11667123-11667161)
chr7 (157-199)||(38073699-38073741)
chr7 (224-325)||(8073608-8073709)
chr7 (224-301)||(10679121-10679198)
chr7 (157-202)||(20884583-20884628)
chr7 (291-323)||(6566206-6566238)
chr7 (236-280)||(36446870-36446914)
[»] chr8 (25 HSPs)
chr8 (151-321)||(7107436-7107602)
chr8 (224-325)||(11257855-11257956)
chr8 (224-317)||(6393548-6393641)
chr8 (155-199)||(7107558-7107602)
chr8 (224-298)||(1042780-1042854)
chr8 (224-326)||(5896072-5896174)
chr8 (224-301)||(8072513-8072590)
chr8 (157-202)||(30069826-30069871)
chr8 (236-325)||(37456100-37456189)
chr8 (237-325)||(2539835-2539922)
chr8 (233-276)||(38869805-38869848)
chr8 (157-199)||(11257861-11257903)
chr8 (224-314)||(16037291-16037381)
chr8 (271-325)||(36068027-36068081)
chr8 (153-199)||(37456141-37456187)
chr8 (224-325)||(40651607-40651709)
chr8 (224-301)||(41128150-41128227)
chr8 (245-315)||(17867452-17867522)
chr8 (151-184)||(8867315-8867348)
chr8 (148-189)||(31451378-31451419)
chr8 (157-198)||(36068033-36068074)
chr8 (157-185)||(2539841-2539869)
chr8 (224-260)||(9402944-9402980)
chr8 (224-260)||(36068368-36068404)
chr8 (145-189)||(38869898-38869942)
[»] chr2 (21 HSPs)
chr2 (145-300)||(45075678-45075830)
chr2 (237-325)||(6590638-6590726)
chr2 (224-298)||(30326106-30326180)
chr2 (237-316)||(27414138-27414217)
chr2 (224-301)||(9374052-9374129)
chr2 (224-325)||(32656244-32656345)
chr2 (224-276)||(41766333-41766385)
chr2 (157-199)||(6590678-6590720)
chr2 (237-315)||(36210337-36210415)
chr2 (233-298)||(33830303-33830368)
chr2 (224-316)||(35310203-35310295)
chr2 (224-275)||(14776322-14776373)
chr2 (151-189)||(27414047-27414085)
chr2 (224-314)||(32227446-32227536)
chr2 (157-199)||(32656250-32656292)
chr2 (231-280)||(10500353-10500402)
chr2 (151-192)||(12972688-12972729)
chr2 (140-189)||(41766425-41766474)
chr2 (224-276)||(16192673-16192725)
chr2 (149-185)||(30545603-30545639)
chr2 (245-301)||(44721446-44721502)
[»] chr4 (31 HSPs)
chr4 (224-325)||(32318516-32318616)
chr4 (151-298)||(10305152-10305297)
chr4 (228-316)||(20789228-20789316)
chr4 (226-300)||(30538002-30538076)
chr4 (224-325)||(10109219-10109320)
chr4 (157-199)||(26533217-26533259)
chr4 (224-325)||(22409403-22409504)
chr4 (224-305)||(24010262-24010343)
chr4 (236-316)||(11873079-11873159)
chr4 (237-325)||(26889944-26890032)
chr4 (244-326)||(32055098-32055180)
chr4 (224-314)||(41069072-41069162)
chr4 (240-325)||(26533180-26533265)
chr4 (224-325)||(41460611-41460711)
chr4 (226-325)||(53039457-53039556)
chr4 (226-276)||(4960430-4960480)
chr4 (151-185)||(21894841-21894875)
chr4 (157-199)||(22409456-22409498)
chr4 (289-326)||(1846144-1846181)
chr4 (148-189)||(32318656-32318697)
chr4 (157-202)||(38793728-38793773)
chr4 (224-269)||(42899557-42899602)
chr4 (151-187)||(2554066-2554102)
chr4 (269-325)||(12166844-12166899)
chr4 (239-315)||(20574948-20575024)
chr4 (151-187)||(28675679-28675715)
chr4 (151-187)||(31690683-31690719)
chr4 (151-187)||(50297631-50297667)
chr4 (157-189)||(52278973-52279005)
chr4 (237-301)||(52279059-52279123)
chr4 (157-205)||(52964840-52964888)
[»] chr3 (29 HSPs)
chr3 (236-325)||(12568694-12568783)
chr3 (236-325)||(13545158-13545247)
chr3 (224-315)||(36923581-36923672)
chr3 (148-189)||(25465765-25465806)
chr3 (224-301)||(28945845-28945922)
chr3 (233-325)||(28451800-28451892)
chr3 (225-316)||(50360651-50360742)
chr3 (224-301)||(21490394-21490471)
chr3 (157-198)||(28451845-28451886)
chr3 (239-296)||(44234448-44234505)
chr3 (226-325)||(37238842-37238941)
chr3 (237-316)||(46515786-46515865)
chr3 (237-315)||(21290217-21290295)
chr3 (285-323)||(25465763-25465801)
chr3 (151-189)||(37238762-37238800)
chr3 (151-189)||(38773651-38773689)
chr3 (235-325)||(43310342-43310432)
chr3 (225-263)||(43310513-43310551)
chr3 (151-189)||(43310594-43310632)
chr3 (227-261)||(43343712-43343746)
chr3 (151-189)||(51980688-51980726)
chr3 (224-325)||(972411-972512)
chr3 (157-198)||(972417-972458)
chr3 (157-202)||(13863715-13863759)
chr3 (154-210)||(43343761-43343818)
chr3 (151-215)||(24355451-24355515)
chr3 (224-308)||(28963438-28963522)
chr3 (224-276)||(51981713-51981765)
chr3 (244-300)||(52915550-52915606)
[»] scaffold0102 (1 HSPs)
scaffold0102 (224-326)||(21232-21334)
[»] chr5 (10 HSPs)
chr5 (224-298)||(10044224-10044298)
chr5 (237-301)||(3344951-3345015)
chr5 (224-303)||(16285911-16285990)
chr5 (224-315)||(10333792-10333883)
chr5 (224-325)||(21369113-21369215)
chr5 (237-325)||(42655990-42656078)
chr5 (157-199)||(13789883-13789925)
chr5 (237-298)||(32317593-32317654)
chr5 (151-187)||(29429737-29429773)
chr5 (224-316)||(39796006-39796097)
[»] chr1 (23 HSPs)
chr1 (224-276)||(12521336-12521388)
chr1 (224-307)||(26700899-26700982)
chr1 (157-202)||(298205-298250)
chr1 (224-325)||(2614800-2614901)
chr1 (224-325)||(3491486-3491587)
chr1 (226-326)||(5198792-5198892)
chr1 (242-325)||(8550384-8550467)
chr1 (224-326)||(42596899-42597001)
chr1 (151-184)||(5799733-5799766)
chr1 (228-285)||(13352301-13352358)
chr1 (224-285)||(25409641-25409702)
chr1 (233-280)||(48722761-48722808)
chr1 (157-199)||(3491539-3491581)
chr1 (151-189)||(27211444-27211482)
chr1 (157-215)||(32441617-32441675)
chr1 (157-199)||(42596906-42596948)
chr1 (237-298)||(49872192-49872253)
chr1 (157-198)||(50746022-50746063)
chr1 (146-189)||(298341-298385)
chr1 (237-325)||(7473192-7473279)
chr1 (224-316)||(21276614-21276706)
chr1 (157-185)||(32441746-32441774)
chr1 (151-191)||(47762708-47762748)
[»] scaffold0154 (2 HSPs)
scaffold0154 (224-325)||(36406-36507)
scaffold0154 (157-199)||(36459-36501)
[»] chr6 (6 HSPs)
chr6 (236-299)||(8853639-8853702)
chr6 (224-301)||(31767807-31767884)
chr6 (224-263)||(34396037-34396076)
chr6 (226-316)||(32785841-32785931)
chr6 (153-202)||(9624889-9624938)
chr6 (282-323)||(9624889-9624930)
[»] scaffold0129 (1 HSPs)
scaffold0129 (224-298)||(37553-37627)
[»] scaffold1157 (2 HSPs)
scaffold1157 (237-325)||(1952-2040)
scaffold1157 (157-199)||(1992-2034)
[»] scaffold0524 (1 HSPs)
scaffold0524 (224-295)||(1481-1552)
[»] scaffold0008 (1 HSPs)
scaffold0008 (287-316)||(240694-240723)
[»] scaffold0007 (1 HSPs)
scaffold0007 (224-325)||(260368-260469)
[»] scaffold0464 (1 HSPs)
scaffold0464 (237-301)||(6701-6765)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 6566061 - 6566381
Alignment:
Q  8 agattatacttacttcgccaccaaactctgaattatcaagaccctcttctcacgagaataagagggttaaaatatgaacaaaaaactattagagattaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  6566061 agattatacttacttcgccaccaaactctgaattatcaagaccctcttctcccgagaataggagggttaaaatatgaacaaaaaactattagagattaag 6566160  T
Q  108 aagtcttacataatatgaaacaataaaaactaatatatatggatcatgctaacttgtgcccttatggcacatgttaagcattccactaatagtaagaatt 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6566161 aagtctcacataatatgaaacaataaaaactaatatatatggatcatgctaacttgtgcccttatgacacatgttaagcattccactaatagtaagaatt 6566260  T
Q  208 tatcgagagnnnnnnnttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataa 307  Q
    |||| |||        |||||||||||||||||||| ||||||||||| ||||||||||||            || || ||| |||||||||||||||||    
T  6566261 tatcaaga--aaaaaattaatattcaacattttgagtaataaattaacgcaatttttaata------------cagtggaatgcttaacatgtgtcataa 6566346  T
Q  308 gggcacaagctagcattttaatatattctaagtat 342  Q
     |||||| ||||||||||||||||||| |||||||    
T  6566347 aggcacatgctagcattttaatatattttaagtat 6566381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 6647615 - 6647513
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| || ||||||| |||||||||||| |||||||  ||||||||||||||| | |||||| |||||||| || ||||||| |||||| || |||    
T  6647615 ttaatattaaatattttgaacaataaattaacacaattttctatacataatttttattagtgaaattcttaacatatgccataaggacacaagttaacat 6647516  T
Q  324 ttt 326  Q
    |||    
T  6647515 ttt 6647513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 38073658 - 38073747
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||| |  ||||| ||||||||||| | |||||||||||| || |||||    
T  38073658 attttgagcaataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacattt 38073747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 21148491 - 21148412
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtc 303  Q
    |||||||| ||||||||||| ||||||||||  ||||||| |||||||||||||||| | || ||| |||||||||||||    
T  21148491 ttaatattaaacattttgagtaataaattaatacaattttcaatacataatttttattagtggaattcttaacatgtgtc 21148412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 31418126 - 31418044
Alignment:
Q  244 caataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcatttt 326  Q
    |||||||||||| |||||||| | ||||||||| ||| |||| |||| |||||||||||| |||||||||||| || ||||||    
T  31418126 caataaattaacgcaatttttgagacataatttctattaatggaatcattaacatgtgtcttaagggcacaagttaacatttt 31418044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 37391137 - 37391045
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    |||||||| ||||||||||||||||||||||| |||||| ||||| |||||   ||| |||  ||| ||||||||||| | ||||||||||||    
T  37391137 ttaatattaaacattttgagcaataaattaacacaatttctaataaataataactattaatagaattcttaacatgtgccttaagggcacaag 37391045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 21388100 - 21388188
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||| |||||| |||| |||||||  | ||||||||| ||  |||| ||||||||| |||||||||||||||||||| || |||||    
T  21388100 ttttgagtaataaagtaacacaattttcgagacataatttctactaatggaatccttaagatgtgtcataagggcacaagttaacattt 21388188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 48723228 - 48723264
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    |||||||||||||||||||||||||||||||||||||    
T  48723228 tcatgctaacttgtgcccttatggcacatgttaagca 48723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 11666707 - 11666749
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  11666707 taacttgtgcacttatggcacatgttaagaattccactaatag 11666749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 39854164 - 39854241
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| || ||||||| |||||||||||| ||||||| |||||||||||| ||| | |  ||| |||||||||||    
T  39854164 ttaatattaaatattttgaacaataaattaacacaattttcaatacataatttatattagtagaattcttaacatgtg 39854241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 41888871 - 41888968
Alignment:
Q  228 tattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||| |||||||||| |||||||||||| ||||||| ||| ||| |||| ||| | || ||| |||| |||||| | |||||||||||| || |||||    
T  41888871 tattaaacattttgaacaataaattaacacaattttcaatgcatgatttctattattggaattcttatcatgtgccctaagggcacaagttaacattt 41888968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 45837975 - 45837939
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    ||||||||||||||||||||| |||||||||||||||    
T  45837975 tcatgctaacttgtgcccttagggcacatgttaagca 45837939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 7907626 - 7907583
Alignment:
Q  144 atatggatcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||    
T  7907626 atatgggtcatgttaacttgtgcccttaaggcacatgttaagca 7907583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 45278787 - 45278724
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgt 300  Q
    ||||||||||||||||||| |||||||| | ||||||||| ||| | || ||||||||| ||||    
T  45278787 ttttgagcaataaattaacgcaatttttgaaacataatttctattagtggaatccttaagatgt 45278724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 11667095 - 11667045
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    |||||| |||| |||||||||||||||||| ||||||  ||||||||||||    
T  11667095 aatattaaacaatttgagcaataaattaacacaatttccaatacataattt 11667045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 11667161 - 11667123
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  11667161 tcatgttaacttgtgcccttagggcacatgttaagcatt 11667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 38073741 - 38073699
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||| ||||||||||||||||| | |||||||    
T  38073741 taacttgtgcccttagggcacatgttaagcatttctctaatag 38073699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 8073608 - 8073709
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| |||||||||||| | |||||||| ||| |||| | | ||||||| ||| | |||||| ||||||||||  | ||||  |||||| ||||||    
T  8073608 ttaatattaaacattttgagccaaaaattaacacaaatttttacatataatttctattagtgaaattcttaacatgtaccctaagaacacaagttagcat 8073707  T
Q  324 tt 325  Q
    ||    
T  8073708 tt 8073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 10679198 - 10679121
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| ||  ||||||||||||||||||| |||||||  |||||  |||||||| | || |||| ||||||||||    
T  10679198 ttaatattgaattttttgagcaataaattaacacaattttcgatacaatatttttattattggaatctttaacatgtg 10679121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 20884628 - 20884583
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaa 202  Q
    |||||||||| |||| ||| ||||||||| ||||||||||||||||    
T  20884628 taacttgtgcgcttagggctcatgttaagaattccactaatagtaa 20884583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 6566238 - 6566206
Alignment:
Q  291 cttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||||||||||||||||||||| ||||||    
T  6566238 cttaacatgtgtcataagggcacaagttagcat 6566206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 36446870 - 36446914
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttat 280  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||    
T  36446870 attttgagcaataaattaaaacaaatttcaatacataatttttat 36446914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 151 - 321
Target Start/End: Original strand, 7107436 - 7107602
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcattccactaatagtaagaatttatcgagagnnnnnnnttaatattcaacattttgagcaataaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |  |        |||||||||||||||||||||||||||    
T  7107436 tcatgctaacttgtgcccttatggcacatgttaagcattccactaatggtaaaaatctattgcaa----aaaattaatattcaacattttgagcaataaa 7107531  T
Q  251 ttaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagc 321  Q
    || || ||||||  |||||||||||| ||| | || ||| ||||||||||| |||||||||||||| ||||    
T  7107532 tttacacaatttccaatacataatttctattagtggaattcttaacatgtgccataagggcacaagttagc 7107602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 11257956 - 11257855
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| |||||||| |||||||||||||| |||||| ||||||||||||| ||| | || ||| ||||||||||| | |||||||||||| || |||    
T  11257956 ttaatattaaacattttaagcaataaattaacacaatttataatacataatttctattagtggaattcttaacatgtgccctaagggcacaagttaacat 11257857  T
Q  324 tt 325  Q
    ||    
T  11257856 tt 11257855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 6393641 - 6393548
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagc 317  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||| ||   ||| ||||||||||| | |||| ||||||||    
T  6393641 ttaatattaaacattttgagcagtaaattaacacaattttttatacataatttctattaacagaattcttaacatgtgccctaagtgcacaagc 6393548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 7107602 - 7107558
Alignment:
Q  155 gctaacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  7107602 gctaacttgtgcccttatggcacatgttaagaattccactaatag 7107558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 1042780 - 1042854
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    |||||||| |||||||| |||||||||||||| ||||||| |||||||||||| ||| | ||||||  |||||||    
T  1042780 ttaatattaaacattttaagcaataaattaacacaattttcaatacataatttctattagtgaaatttttaacat 1042854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 5896072 - 5896174
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| ||||||||||||||||||||||| ||||||| || | ||||||| ||| |||| |||  |||| ||||| | ||||||| |||| || |||    
T  5896072 ttaatattaaacattttgagcaataaattaacacaattttcaacaaataatttctattaatggaatttttaatatgtgccttaagggcgcaagttaacat 5896171  T
Q  324 ttt 326  Q
    |||    
T  5896172 ttt 5896174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 8072513 - 8072590
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| |||||||||| | |||||||||| ||||||| |||||||||||| ||| | || ||| |||||||||||    
T  8072513 ttaatattaaacattttgaaccataaattaacacaattttcaatacataatttctattagtggaattcttaacatgtg 8072590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 30069871 - 30069826
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaa 202  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  30069871 taacttgtgcccttaaggcacatgttaagaattccactaatagtaa 30069826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 37456100 - 37456189
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||| ||||||||||| ||||||  |||||||||||| ||| | || ||| ||||||| ||| | |||||||||||| ||||||||    
T  37456100 attttgagtaataaattaacacaatttccaatacataatttctattagtggaattcttaacacgtgccctaagggcacaagttagcattt 37456189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 2539922 - 2539835
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||||||||||||||  |||||||  | ||||||||| ||| ||| ||||| |||||||||| |||||||||||||| || |||||    
T  2539922 ttttgagcaataaattaatgcaattttcgagacataatttctattaataaaatc-ttaacatgtgccataagggcacaagttaacattt 2539835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 38869848 - 38869805
Alignment:
Q  233 aacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  38869848 aacattttgtgcaataaattaacacaatttttaatacataattt 38869805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 11257861 - 11257903
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  11257861 taacttgtgcccttagggcacatgttaagaattccactaatag 11257903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 16037381 - 16037291
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcaca 314  Q
    |||||||| |||||||||| |||||||||||  ||||||   ||||||||||| ||||| || ||| ||||||||| | ||||| ||||||    
T  16037381 ttaatattaaacattttgaccaataaattaatacaatttccgatacataatttctatcagtggaattcttaacatgagccataatggcaca 16037291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 36068081 - 36068027
Alignment:
Q  271 taatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||||| | |||||| |||||||||||||||||||||||||| || |||||    
T  36068081 taatttttattagtgaaattcttaacatgtgtcataagggcacaagttaacattt 36068027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 37456187 - 37456141
Alignment:
Q  153 atgctaacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  37456187 atgctaacttgtgcccttagggcacgtgttaagaattccactaatag 37456141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 40651709 - 40651607
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaat-gaaatccttaacatgtgtcataagggcacaagctagca 322  Q
    |||||||| ||||||||||| ||||||| |   ||||||| |||||||||||||||||||| ||| || |||||||||  | ||| |||||||| || ||    
T  40651709 ttaatattaaacattttgagtaataaataattacaattttcaatacataatttttatcaatggaattctttaacatgtaccctaaaggcacaagttaaca 40651610  T
Q  323 ttt 325  Q
    |||    
T  40651609 ttt 40651607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 41128227 - 41128150
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| || ||||||||||||||||||||  |||||| |||||||||||| ||| | || ||| ||||| |||||    
T  41128227 ttaatattaaatattttgagcaataaattaacataattttcaatacataatttatattagtggaattcttaatatgtg 41128150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 17867522 - 17867452
Alignment:
Q  245 aataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaa 315  Q
    ||||||||||| ||||||   ||||||||||| ||| |||||||| ||||||||||| | ||||| |||||    
T  17867522 aataaattaacacaatttccgatacataatttctattaatgaaattcttaacatgtgccttaaggacacaa 17867452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 8867348 - 8867315
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaa 184  Q
    ||||||||||||||||||| ||||||||||||||    
T  8867348 tcatgctaacttgtgccctaatggcacatgttaa 8867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 31451419 - 31451378
Alignment:
Q  148 ggatcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    |||||||| |||||||||| |||| |||||||||||||||||    
T  31451419 ggatcatgttaacttgtgctcttagggcacatgttaagcatt 31451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 36068033 - 36068074
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaata 198  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||    
T  36068033 taacttgtgcccttatgacacatgttaagaatttcactaata 36068074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 2539841 - 2539869
Alignment:
Q  157 taacttgtgcccttatggcacatgttaag 185  Q
    |||||||||||||||||||||||||||||    
T  2539841 taacttgtgcccttatggcacatgttaag 2539869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 9402944 - 9402980
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaat 260  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  9402944 ttaatattaaacattttgagcaataaattaacacaat 9402980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 36068404 - 36068368
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaat 260  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  36068404 ttaatattaaacattttgagcaataaattaacacaat 36068368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 38869942 - 38869898
Alignment:
Q  145 tatggatcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||| ||||||||||||||| |||||||||||| ||||    
T  38869942 tatgggtcatgttaacttgtgcccttaaggcacatgttaaacatt 38869898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 145 - 300
Target Start/End: Complemental strand, 45075830 - 45075678
Alignment:
Q  145 tatggatcatgctaacttgtgcccttatggcacatgttaagcattccactaatagtaagaatttatcgagagnnnnnnnttaatattcaacattttgagc 244  Q
    ||||| |||||| ||||||||  ||||||||||||||||||||||||| |||| |||||||||||| || |        |||||||||||| |||| |||    
T  45075830 tatgggtcatgcaaacttgtgatcttatggcacatgttaagcattccattaatggtaagaatttattgaaa---aaaaattaatattcaacgttttaagc 45075734  T
Q  245 aataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgt 300  Q
    ||||||||||| ||||||| |||||||||||| ||| | ||||||  |||||||||    
T  45075733 aataaattaacacaattttcaatacataatttatattagtgaaatttttaacatgt 45075678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 6590638 - 6590726
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||| |||||||||||||| |||||| | | ||||||||| ||| | || |||||||||||||||||||||||||||||| || |||||    
T  6590638 tttttagcaataaattaacacaatttctgaaacataatttctattagtggaatccttaacatgtgtcataagggcacaagttaacattt 6590726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 30326106 - 30326180
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    |||||||| ||||||||||| ||||||||||| ||||||| |||||||||||| | | |||||||| ||||||||    
T  30326106 ttaatattaaacattttgagtaataaattaacacaattttcaatacataatttctcttaatgaaattcttaacat 30326180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 27414138 - 27414217
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    ||||||||||||||| ||| ||||||   | ||||||||||||| | |||||||||||||||||||| | ||||||||||    
T  27414138 ttttgagcaataaatgaacgcaatttccgagacataatttttattagtgaaatccttaacatgtgtccttagggcacaag 27414217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 9374129 - 9374052
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| ||||||||||||||||||||||  ||||||  |||||||||||| | | ||||||||  ||||||||||    
T  9374129 ttaatattaaacattttgagcaataaattaaaacaatttccaatacataatttctgttaatgaaatttttaacatgtg 9374052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 32656345 - 32656244
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| || ||||| | |||||||||||| ||| ||| ||||||| |||| ||| | |||||| ||||||||||| | |||||||||||| || |||    
T  32656345 ttaatattaaatattttaatcaataaattaacacaagtttcaatacatgatttctattagtgaaattcttaacatgtgccctaagggcacaagttaacat 32656246  T
Q  324 tt 325  Q
    ||    
T  32656245 tt 32656244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 41766385 - 41766333
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    |||||||| |||||||||||||||||| |||| ||||||| ||||||||||||    
T  41766385 ttaatattaaacattttgagcaataaaataacacaattttcaatacataattt 41766333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 6590720 - 6590678
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  6590720 taacttgtgcccttatgacacatgttaaggattccactaatag 6590678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 36210415 - 36210337
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaa 315  Q
    |||||||||||||| |||| |||||||| | ||||||||||||  ||| |||| ||||||||||| |  ||||||||||    
T  36210415 ttttgagcaataaaataacacaatttttgagacataatttttactaataaaattcttaacatgtgccgcaagggcacaa 36210337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 33830303 - 33830368
Alignment:
Q  233 aacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    ||||||||||||||||||||||| ||||||  |||||||||||| ||| | | |||| ||||||||    
T  33830303 aacattttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacat 33830368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 35310295 - 35310203
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    |||||||| |||||||||| ||||||||||||  |||||  ||| ||||||||| || | || ||| |||| |||||| | ||||||||||||    
T  35310295 ttaatattaaacattttgaacaataaattaacataatttccaatgcataattttcattattggaattcttatcatgtgccctaagggcacaag 35310203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 14776373 - 14776322
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatt 275  Q
    |||||||| |||| |||||| ||||||||||| ||||||| |||||||||||    
T  14776373 ttaatattaaacaatttgagtaataaattaacacaattttcaatacataatt 14776322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 27414047 - 27414085
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  27414047 tcatgttaacttgtgcccttagggcacatgttaagcatt 27414085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 32227536 - 32227446
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcaca 314  Q
    |||||||| |||||||| | |||||||| ||| ||||||| |||||||||||| ||| | |  ||| |||||||| || | ||||||||||    
T  32227536 ttaatattaaacattttaaacaataaatgaacacaattttcaatacataatttctattagtagaattcttaacatatgccctaagggcaca 32227446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 32656250 - 32656292
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||    
T  32656250 taacttgtgcccttagggcacatgttaagaatttcactaatag 32656292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 10500402 - 10500353
Alignment:
Q  231 tcaacattttgagcaataaattaactcaatttttaatacataatttttat 280  Q
    |||||||||||||||||||| |||| ||||||   |||||||||||||||    
T  10500402 tcaacattttgagcaataaagtaacacaatttccgatacataatttttat 10500353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 12972688 - 12972729
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcattcca 192  Q
    |||||||||||||||| |||| ||||||||||||||| ||||    
T  12972688 tcatgctaacttgtgctcttagggcacatgttaagcaatcca 12972729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 41766474 - 41766425
Alignment:
Q  140 atatatatggatcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    |||||| ||||||||| ||||||||||||| ||| |||||||||| ||||    
T  41766474 atatatttggatcatgttaacttgtgccctcatgacacatgttaaacatt 41766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 16192725 - 16192673
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    ||||||||  ||| |||||||||||||||||| ||||||| |||| |||||||    
T  16192725 ttaatattttacaatttgagcaataaattaacacaattttcaatatataattt 16192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 30545639 - 30545603
Alignment:
Q  149 gatcatgctaacttgtgcccttatggcacatgttaag 185  Q
    |||||||||||||| |||||||| |||||||||||||    
T  30545639 gatcatgctaacttatgcccttagggcacatgttaag 30545603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 44721446 - 44721502
Alignment:
Q  245 aataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||||||  ||||||  ||||||||||||||| | |||||||| |||||||||    
T  44721446 aataaattaacagaattttcgatacataatttttattagtgaaatccataacatgtg 44721502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 32318616 - 32318516
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| |||||||||| |||||||||||| ||||||| |||||||||||| ||| |||||||| ||||||||||| | |||||||||||| || |||    
T  32318616 ttaatattaaacattttgaacaataaattaacacaattttcaatacataatttctattaatgaaattcttaacatgtggc-taagggcacaagttaacat 32318518  T
Q  324 tt 325  Q
    ||    
T  32318517 tt 32318516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 298
Target Start/End: Original strand, 10305152 - 10305297
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcattccactaatagtaagaatttatcgagagnnnnnnnttaatattcaacattttgagcaataaa 250  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||| || |        |||||||||||||||||||  ||||||    
T  10305152 tcatgctaacttgtgctcttatggcacatgttaaccattccactaattgtaaggatttattgaaa--aaaaaattaatattcaacattttgaataataaa 10305249  T
Q  251 ttaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    ||||| ||||||| ||||  |||||| ||| | |||||| || |||||    
T  10305250 ttaacacaattttcaatatttaatttctattattgaaattctcaacat 10305297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 316
Target Start/End: Original strand, 20789228 - 20789316
Alignment:
Q  228 tattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    |||| ||||||||||||||||||||||| ||||||| || | ||||||||||| |||| ||||||||| || ||||||||| |||||||    
T  20789228 tattaaacattttgagcaataaattaacacaattttcaacaaataatttttattaatgtaatccttaagatatgtcataagagcacaag 20789316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 30538002 - 30538076
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgt 300  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||| |||| ||| ||||||||||    
T  30538002 aatattaaacattttgagcaataaattaacacaattttcaatacataatttctattaatggaattcttaacatgt 30538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 10109320 - 10109219
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||| | || ||| ||||| ||||| | ||||| |||||| || |||    
T  10109320 ttaatattaaacattttgagcaataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtgccctaaggacacaagttaacat 10109221  T
Q  324 tt 325  Q
    ||    
T  10109220 tt 10109219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 26533259 - 26533217
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  26533259 taacttgtgcccttatggcacatgttaagaattccactaatag 26533217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 22409403 - 22409504
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| |||||||| |||||||||||||| ||||||  ||||||| |||| ||| | |  ||| ||||||||||| | |||||||||||| || |||    
T  22409403 ttaatattaaacattttaagcaataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacat 22409502  T
Q  324 tt 325  Q
    ||    
T  22409503 tt 22409504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 24010262 - 24010343
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcat 305  Q
    |||||||| |||||||||  |||||||||||| ||||||| |||||||||||| ||| | || ||| |||||||||| ||||    
T  24010262 ttaatattaaacattttggacaataaattaacacaattttcaatacataatttctattagtggaattcttaacatgtatcat 24010343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 11873159 - 11873079
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    ||||||| |||||||||||| |||||| ||||| ||||| | ||||| || |||  |||||||||||| ||||||||||||    
T  11873159 attttgaacaataaattaacacaatttctaatatataatctctatcagtggaatttttaacatgtgtcttaagggcacaag 11873079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 26889944 - 26890032
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||||||| ||||||| |||||||  | ||||||||| ||| | |||||||||||||||||| | ||||| |||||| || |||||    
T  26889944 ttttgagcaattaattaacgcaattttcgagacataatttctattagtgaaatccttaacatgtgccctaaggacacaagttaacattt 26890032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 32055098 - 32055180
Alignment:
Q  244 caataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcatttt 326  Q
    |||||||||||| |||||||  ||||||||||| ||| |||| |||| ||||||||||   |||||||||||| || ||||||    
T  32055098 caataaattaacacaattttcgatacataatttctattaatggaatctttaacatgtgctttaagggcacaagttaacatttt 32055180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 41069072 - 41069162
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcaca 314  Q
    |||||||| || ||||| |||||||||||||| ||||||| || ||||||||| ||| | | |||| ||| ||||| ||| ||||||||||    
T  41069072 ttaatattaaatattttaagcaataaattaacacaattttcaaaacataatttctattagtaaaattctttacatgggtcttaagggcaca 41069162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 26533180 - 26533265
Alignment:
Q  240 tgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||| |||||||||| ||||||   ||||||||||| ||| | || ||| ||||||||||| |||||||||||||| || |||||    
T  26533180 tgagcgataaattaacacaatttccgatacataatttctattagtggaattcttaacatgtgccataagggcacaagttaacattt 26533265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 41460611 - 41460711
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| ||  |||| || ||||||||||| ||||||||||||||| |||| ||| | || ||| ||||||||||||| ||| |||||||| || |||    
T  41460611 ttaatattaaattttttaagtaataaattaacacaatttttaatacat-atttctattactggaattcttaacatgtgtcctaaaggcacaagttaacat 41460709  T
Q  324 tt 325  Q
    ||    
T  41460710 tt 41460711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 53039457 - 53039556
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||| ||| ||||  ||||||||||||| ||||| | |||||||||||| ||| | |||||| ||||||||||  | |||| ||||||| || |||||    
T  53039457 aatattaaactttttatgcaataaattaacacaattatcaatacataatttctattagtgaaattcttaacatgtaccttaagagcacaagttaacattt 53039556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 4960430 - 4960480
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    |||||| |||| |||||||||||||||||| ||||||| ||||| ||||||    
T  4960430 aatattaaacaatttgagcaataaattaacacaattttcaatacgtaattt 4960480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 21894875 - 21894841
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaag 185  Q
    ||||||||||||||||||||| |||||||||||||    
T  21894875 tcatgctaacttgtgcccttacggcacatgttaag 21894841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 22409498 - 22409456
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||    
T  22409498 taacttgtgcccttagggcacatgttaagaattctactaatag 22409456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 1846181 - 1846144
Alignment:
Q  289 tccttaacatgtgtcataagggcacaagctagcatttt 326  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  1846181 tccttaacatgtgtcttaagggcacaagttagcatttt 1846144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 32318697 - 32318656
Alignment:
Q  148 ggatcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    |||||| | ||||||||||||||| |||||||||||||||||    
T  32318697 ggatcacgttaacttgtgcccttagggcacatgttaagcatt 32318656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 38793728 - 38793773
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaa 202  Q
    ||||||||||||||| | | ||||||||| ||||||||||||||||    
T  38793728 taacttgtgcccttaggactcatgttaagaattccactaatagtaa 38793773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 42899557 - 42899602
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatac 269  Q
    |||||||| |||||||| |||||||||||||| ||||||| |||||    
T  42899557 ttaatattaaacattttaagcaataaattaacacaattttaaatac 42899602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 2554066 - 2554102
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    ||||||||||||||||||||  |||||||||||||||    
T  2554066 tcatgctaacttgtgcccttcgggcacatgttaagca 2554102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 12166844 - 12166899
Alignment:
Q  269 cataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||||||||  ||||||| ||||| |||||| |||||||||||| ||||||||    
T  12166844 cataatttttatctttgaaatc-ttaacttgtgtcctaagggcacaagttagcattt 12166899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 20574948 - 20575024
Alignment:
Q  239 ttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaa 315  Q
    ||||| ||||||||||| ||||||  |||||| |||| |||| |||| ||| ||||||||||| | ||||| |||||    
T  20574948 ttgagtaataaattaacacaatttccaatacacaattattattaatggaattcttaacatgtgccctaaggacacaa 20575024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 28675679 - 28675715
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  28675679 tcatgttaacttgtgcccttagggcacatgttaagca 28675715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 31690719 - 31690683
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31690719 tcatgctaacttgtgcccttaaggaacatgttaagca 31690683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 50297631 - 50297667
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  50297631 tcatgttaacttgtgcccttagggcacatgttaagca 50297667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 52278973 - 52279005
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcatt 189  Q
    |||||| ||||||||||||||||||||||||||    
T  52278973 taacttatgcccttatggcacatgttaagcatt 52279005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 52279059 - 52279123
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    ||||||||||||||||||| |||||| | | ||||||||| ||| | ||||||| ||||| ||||    
T  52279059 ttttgagcaataaattaacacaatttcttaaacataatttctattagtgaaatcattaacttgtg 52279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 52964840 - 52964888
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaagaa 205  Q
    ||||||||||||||| | ||||||||||| ||||||| ||||| |||||    
T  52964840 taacttgtgcccttaagacacatgttaagaattccacaaatagaaagaa 52964888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 12568694 - 12568783
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||||||||||||||  ||||||  |||| ||||||||||| |||||||| ||||||||||| | |||||||||||| || |||||    
T  12568694 attttgagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaacattt 12568783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 13545158 - 13545247
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||||||||||||||  ||||||  |||| ||||||||||| |||||||| ||||||||||| | |||||||||||| || |||||    
T  13545158 attttgagcaataaattaagacaatttacaataaataatttttattaatgaaattcttaacatgtgccctaagggcacaagttaacattt 13545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 315
Target Start/End: Original strand, 36923581 - 36923672
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaa 315  Q
    |||||||| ||||||||||||||||||||||| ||||||  |||||||||||| ||| | || ||| ||||| ||||| | |||| ||||||    
T  36923581 ttaatattaaacattttgagcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtgccctaagagcacaa 36923672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 25465806 - 25465765
Alignment:
Q  148 ggatcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  25465806 ggatcatgctaacttgtgcccttatgacacatgttaagcatt 25465765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 28945922 - 28945845
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| |||||||| |||||||||||||| ||||||  ||||||| |||||||| | || ||| |||||||||||    
T  28945922 ttaatattaaacattttaagcaataaattaacacaatttccaatacatgatttttattagtggaattcttaacatgtg 28945845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 28451800 - 28451892
Alignment:
Q  233 aacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||||||  ||||||||||| ||||||  |||| ||||||||||| | || ||| ||||||||||| | |||||||||||| || |||||    
T  28451800 aacattttgaataataaattaacacaatttccaatatataatttttattagtggaattcttaacatgtgccctaagggcacaagttaacattt 28451892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 50360742 - 50360651
Alignment:
Q  225 taatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    ||||||| ||||||||||||||||||||||| | ||||| |||| ||||||| ||| | |  ||| ||||| ||||| | ||||||||||||    
T  50360742 taatattaaacattttgagcaataaattaacaccattttcaatatataatttatattagtagaattcttaatatgtgccctaagggcacaag 50360651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 21490471 - 21490394
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| |||||||||| |||||||||||| ||||||  |||| ||||||| ||| | || ||| |||||||||||    
T  21490471 ttaatattaaacattttgaacaataaattaacacaatttccaatatataatttatattagtggaattcttaacatgtg 21490394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 28451886 - 28451845
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaata 198  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  28451886 taacttgtgcccttagggcacatgttaagaattccactaata 28451845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 44234505 - 44234448
Alignment:
Q  239 ttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaac 296  Q
    ||||||||||||||||| |||||||||| | ||||||| ||||| ||||||| |||||    
T  44234505 ttgagcaataaattaacgcaatttttaagatataatttctatcagtgaaatcattaac 44234448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 325
Target Start/End: Original strand, 37238842 - 37238941
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||| |||||||| | |||||||||||| ||||||  || | ||||||| ||| |||| ||| ||||||||||| | | |||||||||| || |||||    
T  37238842 aatattaaacattttaaacaataaattaacacaatttccaaaaaataatttctattaatggaattcttaacatgtgcccttagggcacaagttaacattt 37238941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 46515865 - 46515786
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    ||||||| ||||||||||| |||||||  |||||  |||||||| | ||||||| ||||||| |||| ||||| ||||||    
T  46515865 ttttgagaaataaattaacacaattttcgatacaatatttttattagtgaaatcattaacatatgtcttaaggacacaag 46515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 21290217 - 21290295
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaa 315  Q
    |||| ||||||||||||||  |||||   ||||||||||| ||| |||| |||  |||||||||| |||||||||||||    
T  21290217 ttttaagcaataaattaacataatttccgatacataatttctattaatggaatatttaacatgtgccataagggcacaa 21290295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 25465763 - 25465801
Alignment:
Q  285 gaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  25465763 gaaatgcttaacatgtgtcataagggcacaagttagcat 25465801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 37238762 - 37238800
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  37238762 tcatgttaacttgtgcccttagggcacatgttaagcatt 37238800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 38773689 - 38773651
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  38773689 tcatgttaacttgtgcccttagggcacatgttaagcatt 38773651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 43310432 - 43310342
Alignment:
Q  235 cattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||||||||||||||||| ||||||  |||||| ||||| ||| | |  ||| |||||||||||   ||| |||||||| ||||||||    
T  43310432 cattttgagcaataaattaacacaatttccaatacaaaatttctattagtagaattcttaacatgtgctctaaaggcacaagttagcattt 43310342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 43310551 - 43310513
Alignment:
Q  225 taatattcaacattttgagcaataaattaactcaatttt 263  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  43310551 taatattaaacattttgagcaataaattaacacaatttt 43310513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 43310632 - 43310594
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  43310632 tcatgctaacttgtgccctcagggcacatgttaagcatt 43310594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 43343746 - 43343712
Alignment:
Q  227 atattcaacattttgagcaataaattaactcaatt 261  Q
    ||||||||||||||||||||||||||||| |||||    
T  43343746 atattcaacattttgagcaataaattaacacaatt 43343712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 51980688 - 51980726
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  51980688 tcatgttaacttgtgcccttagggcacatgttaagcatt 51980726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 972512 - 972411
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| |||||||| | |||||||||||  || |||  ||||| |||||||||| | || ||| ||||||||||| | ||||| |||||| || |||    
T  972512 ttaatattaaacattttaaacaataaattaatacagtttccaatacctaatttttattagtggaattcttaacatgtgccctaaggacacaagttaacat 972413  T
Q  324 tt 325  Q
    ||    
T  972412 tt 972411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 972417 - 972458
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaata 198  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||    
T  972417 taacttgtgtccttagggcacatgttaagaattccactaata 972458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 13863759 - 13863715
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaa 202  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  13863759 taacttgtgcc-ttagggcacatgttaagaattccactaatagtaa 13863715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 43343818 - 43343761
Alignment:
Q  154 tgctaacttgtgccctt-atggcacatgttaagcattccactaatagtaagaatttat 210  Q
    ||||||||||||| ||| ||| |||||||||| ||||||||||||  |||||||||||    
T  43343818 tgctaacttgtgctctttatgacacatgttaaacattccactaatcataagaatttat 43343761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 24355451 - 24355515
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcattccactaatagtaagaatttatcgaga 215  Q
    ||||| ||||||||||||||| |||||||||||||| ||| || || || ||| |||||| ||||    
T  24355451 tcatgttaacttgtgcccttaaggcacatgttaagctttctacaaagagcaagtatttattgaga 24355515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 28963438 - 28963522
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataag 308  Q
    |||||||| |||| ||| ||||||||||||||| |||||  ||| ||| |||| ||| | ||||||  |||||||||||| ||||    
T  28963438 ttaatattaaacaatttaagcaataaattaacttaatttccaatgcatcatttctattagtgaaatttttaacatgtgtcctaag 28963522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 51981713 - 51981765
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    |||||||| |||||||||| |||||||||||| ||||||  ||| ||||||||    
T  51981713 ttaatattaaacattttgaacaataaattaacacaatttccaatgcataattt 51981765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 52915550 - 52915606
Alignment:
Q  244 caataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgt 300  Q
    |||||||||||| ||||||| ||| ||||| || ||| |||||||| ||||||||||    
T  52915550 caataaattaacacaattttcaatgcataacttctattaatgaaattcttaacatgt 52915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 21334 - 21232
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| ||||||||||  ||||||||||| ||||||  |||| ||||||||||| | || ||| ||||||||||||| ||| |||||||| || |||    
T  21334 ttaatattaaacattttgaataataaattaacacaatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacat 21235  T
Q  324 ttt 326  Q
    |||    
T  21234 ttt 21232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 10044224 - 10044298
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    |||||||| ||||||||||||||||||||||| ||| ||| |||||||||||| ||| ||||| || ||||||||    
T  10044224 ttaatattaaacattttgagcaataaattaacacaactttcaatacataatttctattaatgacattcttaacat 10044298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 3344951 - 3345015
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||| |||||||||||||| |||||| ||| ||||||||| ||| ||||||||||||||||||||    
T  3344951 ttttaagcaataaattaacgcaatttctaaaacataatttctattaatgaaatccttaacatgtg 3345015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 16285911 - 16285990
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtc 303  Q
    |||||||| || ||| | |||||||||||||| ||||||| ||| |||||||| ||| |||||||| |||||||||||||    
T  16285911 ttaatattaaatattcttagcaataaattaacacaattttcaatgcataatttctattaatgaaattcttaacatgtgtc 16285990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 10333883 - 10333792
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaa 315  Q
    |||||||| ||  ||||||||||||||||||  || |||| || ||||||||||||| | |  ||||||||| ||||||| |||||||||||    
T  10333883 ttaatattaaattttttgagcaataaattaatgcatttttcaagacataatttttattagttgaatccttaatatgtgtcttaagggcacaa 10333792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 21369215 - 21369113
Alignment:
Q  224 ttaatattcaacattttgagc-aataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagca 322  Q
    |||||||| || ||||| ||| ||||||||||| ||||||| ||||||| || | ||| | |||||||||||||||| | | |||||||||||| || ||    
T  21369215 ttaatattaaatattttaagctaataaattaacacaattttcaatacatgatatctattagtgaaatccttaacatgcgccttaagggcacaagttaaca 21369116  T
Q  323 ttt 325  Q
    |||    
T  21369115 ttt 21369113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 42655990 - 42656078
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||||||||||||||  |||||||  | ||||||||| ||  | | ||||||||||||||| ||||||||||| ||| || |||||    
T  42655990 ttttgagcaataaattaatgcaattttcgagacataatttctactagtaaaatccttaacatgtatcataagggcataagttaacattt 42656078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 13789925 - 13789883
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||    
T  13789925 taacttgtgtccttagggcacatgttaaggattccactaatag 13789883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 32317654 - 32317593
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    |||||| |||||||||||| |||||||||||| ||||||| ||| | ||||||  |||||||    
T  32317654 ttttgaacaataaattaacacaatttttaatatataatttctattattgaaattattaacat 32317593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 29429773 - 29429737
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagca 187  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  29429773 tcatgttaacttgtgcccttagggcacatgttaagca 29429737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 39796097 - 39796006
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    |||||||| ||  |||| |||||||||||||| |||||||  ||||||||||| ||| | ||||||  |||| ||||||| |||||| |||||    
T  39796097 ttaatattaaatttttttagcaataaattaacgcaattttcgatacataatttgtattagtgaaatttttaagatgtgtc-taagggtacaag 39796006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 12521388 - 12521336
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataattt 276  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  12521388 ttaatattaaacattttgagcaataaattaacataatttttaatacataattt 12521336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 26700982 - 26700899
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataa 307  Q
    |||||||| ||| ||| || |||||||||||| ||||||| ||||||||||||||||||||  |||  ||||||| ||||||||    
T  26700982 ttaatattaaacctttcgaacaataaattaacacaattttcaatacataatttttatcaatataatttttaacatatgtcataa 26700899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 298205 - 298250
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaa 202  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  298205 taacttgtgcccttagggcacatgttaagaattccactaatagtaa 298250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 2614901 - 2614800
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| ||  ||||||| ||||||||||| ||||||  || ||||||||||||| |||| |||||||||||| || | ||||| |||||| || |||    
T  2614901 ttaatattaaattttttgagaaataaattaacgcaatttcaaaaacataatttttattaatggaatccttaacatatgccctaaggacacaagttaacat 2614802  T
Q  324 tt 325  Q
    ||    
T  2614801 tt 2614800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 3491486 - 3491587
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| || |||||||||||||||||| | ||||||  |||||||||||| ||| | || ||| |||||||| || | |||||||||||| || |||    
T  3491486 ttaatattaaaaattttgagcaataaattatcacaatttccaatacataatttctattagtggaattcttaacatttgccctaagggcacaagttaacat 3491585  T
Q  324 tt 325  Q
    ||    
T  3491586 tt 3491587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 326
Target Start/End: Complemental strand, 5198892 - 5198792
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||| ||||||||||  ||||||||||| ||||||  |||||||||||| ||| | |  ||| |||||||||||||| ||||| ||||| || |||||    
T  5198892 aatattaaacattttgaataataaattaacacaatttccaatacataatttctattagtagaattcttaacatgtgtcacaagggtacaagttaacattt 5198793  T
Q  326 t 326  Q
    |    
T  5198792 t 5198792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 8550384 - 8550467
Alignment:
Q  242 agcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||||||||||||| ||||||  |||||||||||| ||| | || ||| |||||||| ||||||| ||||||||| || |||||    
T  8550384 agcaataaattaacacaatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacattt 8550467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 42597001 - 42596899
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| |||||||| |||||||||||||| |||| || |||| || |||| ||| | || ||| ||||||||||  ||| |||||||||| || |||    
T  42597001 ttaatattaaacattttaagcaataaattaacacaatattcaatatatgatttctattagtggaattcttaacatgtaccatgagggcacaagttaacat 42596902  T
Q  324 ttt 326  Q
    |||    
T  42596901 ttt 42596899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 5799733 - 5799766
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaa 184  Q
    ||||||||||||||||||||||||||||||||||    
T  5799733 tcatgctaacttgtgcccttatggcacatgttaa 5799766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 13352301 - 13352358
Alignment:
Q  228 tattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatg 285  Q
    |||| |||||||||| |||||||||||| ||||||| ||| |||||||||||| ||||    
T  13352301 tattaaacattttgaacaataaattaacacaattttcaatgcataatttttattaatg 13352358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 25409641 - 25409702
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatg 285  Q
    |||||||| || || ||||||||||||||||| ||||||| |||||||||||| ||| ||||    
T  25409641 ttaatattaaatatcttgagcaataaattaacacaattttcaatacataatttctattaatg 25409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 48722761 - 48722808
Alignment:
Q  233 aacattttgagcaataaattaactcaatttttaatacataatttttat 280  Q
    |||||||||||||||| |||||| ||||||  ||||||||||||||||    
T  48722761 aacattttgagcaatacattaacacaatttccaatacataatttttat 48722808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 3491581 - 3491539
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||| |||| |||||||| |||||||||||||    
T  3491581 taacttgtgcccttagggcaaatgttaagaattccactaatag 3491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 27211482 - 27211444
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcatt 189  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  27211482 tcatgttaacttgtgcccttagggcacatgttaagcatt 27211444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 32441617 - 32441675
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatagtaagaatttatcgaga 215  Q
    ||||||||||||||| |||||||||||||  |||||| || |||||| |||||| ||||    
T  32441617 taacttgtgcccttagggcacatgttaaggtttccacaaagagtaagtatttattgaga 32441675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 42596906 - 42596948
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||| |||| |||||||||| |||||||||||||    
T  42596906 taacttgtgccctcatggtacatgttaagaattccactaatag 42596948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 49872253 - 49872192
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    ||||||||||||||||||| |||||||  |||||  |||||||| | || ||||||||||||    
T  49872253 ttttgagcaataaattaacacaattttcgatacaacatttttattagtggaatccttaacat 49872192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 50746022 - 50746063
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaata 198  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||    
T  50746022 taacttgtgtccttaaggcacatgttaaggattccactaata 50746063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 298385 - 298341
Alignment:
Q  146 atggatcatgctaacttgtgcccttatggc-acatgttaagcatt 189  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||    
T  298385 atggatcatgttaacttgtgcccttaaggcaacatgttaagcatt 298341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 325
Target Start/End: Complemental strand, 7473279 - 7473192
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    ||||||| |||||||||||  ||||||||| | ||||||| ||| |||||||   |||||||||| |||||| ||||||| || |||||    
T  7473279 ttttgagaaataaattaacgtaatttttaaaagataatttctattaatgaaa-atttaacatgtgccataagagcacaagttaacattt 7473192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 316
Target Start/End: Original strand, 21276614 - 21276706
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    |||||||| ||||| ||| |  |||||||||| ||||||| |||||||||||| ||| | || ||| |||| |||||| | ||||| ||||||    
T  21276614 ttaatattaaacatcttgcgtgataaattaacacaattttcaatacataatttctattagtggaattcttatcatgtgccctaaggacacaag 21276706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 32441774 - 32441746
Alignment:
Q  157 taacttgtgcccttatggcacatgttaag 185  Q
    |||||||||||||||||||||||||||||    
T  32441774 taacttgtgcccttatggcacatgttaag 32441746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 47762708 - 47762748
Alignment:
Q  151 tcatgctaacttgtgcccttatggcacatgttaagcattcc 191  Q
    |||||||||||||||||||||  |||||||||||| |||||    
T  47762708 tcatgctaacttgtgcccttagagcacatgttaagaattcc 47762748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 36406 - 36507
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||||||| || |||||||| ||||||||||| ||||||  |||||||||||| ||| | || ||| |||||||||||   |||||||||||| || |||    
T  36406 ttaatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtgctttaagggcacaagttaacat 36505  T
Q  324 tt 325  Q
    ||    
T  36506 tt 36507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 36501 - 36459
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    |||||||||||||||  |||||||||||| |||||||||||||    
T  36501 taacttgtgcccttaaagcacatgttaagaattccactaatag 36459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 8853702 - 8853639
Alignment:
Q  236 attttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatg 299  Q
    |||||||||||||||||||| ||||||| |||||||  ||||||| |||| ||| |||||||||    
T  8853702 attttgagcaataaattaacacaattttcaatacattgtttttattaatggaattcttaacatg 8853639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 31767884 - 31767807
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    |||||||| |||||||| | |||||||||||| ||||||| ||| |||||||| |||  ||| ||| |||||||||||    
T  31767884 ttaatattaaacatttttaccaataaattaacacaattttcaatgcataatttctatttatggaattcttaacatgtg 31767807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 34396037 - 34396076
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttt 263  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  34396037 ttaatattcatcattttgagcaataaattaacacaatttt 34396076  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 32785841 - 32785931
Alignment:
Q  226 aatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaag 316  Q
    |||||| || |||||||||||||||||||   |||||  |||||||||||| ||| | || ||| ||||||||||| | ||||| ||||||    
T  32785841 aatattaaatattttgagcaataaattaaaataatttccaatacataatttctattagtggaattcttaacatgtgccctaaggccacaag 32785931  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 9624889 - 9624938
Alignment:
Q  153 atgctaacttgtgcccttatggcacatgttaagcattccactaatagtaa 202  Q
    ||||||||||||||||||||| ||||||||||  ||| || |||||||||    
T  9624889 atgctaacttgtgcccttatgacacatgttaaaaatttcattaatagtaa 9624938  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 9624930 - 9624889
Alignment:
Q  282 aatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  9624930 aatgaaatttttaacatgtgtcataagggcacaagttagcat 9624889  T

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Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 37627 - 37553
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacat 298  Q
    |||||||| |||||||| |||||||||||||| |||||| |||||||| | || ||| | |||||| ||||||||    
T  37627 ttaatattaaacattttaagcaataaattaacacaatttctaatacatgacttctattagtgaaattcttaacat 37553  T

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Target: scaffold1157 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 1952 - 2040
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcattt 325  Q
    |||| |||||||||||||| |||||||  | ||||||||| ||| | || |||| |||||||||| | |||||||||||| || |||||    
T  1952 ttttaagcaataaattaacacaattttcgagacataatttctattagtggaatcattaacatgtgccctaagggcacaagttaacattt 2040  T

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Target: scaffold1157; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 2034 - 1992
Alignment:
Q  157 taacttgtgcccttatggcacatgttaagcattccactaatag 199  Q
    ||||||||||||||| ||||||||||||  |||||||||||||    
T  2034 taacttgtgcccttagggcacatgttaatgattccactaatag 1992  T

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Target: scaffold0524 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 1481 - 1552
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaa 295  Q
    |||||||  ||||||||||||||||||||||| ||||||   ||||||||||| ||| |||| ||| |||||    
T  1481 ttaatatcaaacattttgagcaataaattaacacaatttccgatacataatttctattaatggaattcttaa 1552  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 316
Target Start/End: Original strand, 240694 - 240723
Alignment:
Q  287 aatccttaacatgtgtcataagggcacaag 316  Q
    ||||||||||||||||||||||||||||||    
T  240694 aatccttaacatgtgtcataagggcacaag 240723  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 260368 - 260469
Alignment:
Q  224 ttaatattcaacattttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtgtcataagggcacaagctagcat 323  Q
    |||| ||| |||||||||| |||||||||||| ||| ||| |||||||||||| ||| | ||  || ||||| ||||| | | |||||||||| || |||    
T  260368 ttaacattaaacattttgaacaataaattaacacaaatttcaatacataatttctattagtggtattcttaatatgtgcccttagggcacaagttatcat 260467  T
Q  324 tt 325  Q
    ||    
T  260468 tt 260469  T

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Target: scaffold0464 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 6765 - 6701
Alignment:
Q  237 ttttgagcaataaattaactcaatttttaatacataatttttatcaatgaaatccttaacatgtg 301  Q
    ||||||||||||||||||| ||||||  || | ||||||| |||  ||| |||||||||||||||    
T  6765 ttttgagcaataaattaacgcaatttccaagatataatttctatttatggaatccttaacatgtg 6701  T

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