View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_15 (Length: 383)
Name: NF8672_low_15
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 42184176 - 42183794
Alignment:
| Q |
1 |
agattttagcaaaagctatactttgaagcttaagccttcaacaaaatcacattggcaacctgatttcatgaaactcatatgatatgaatcaaaacatgtg |
100 |
Q |
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| T |
42184176 |
agattttagcaaaagctatacttagaagcttaagccttcaacaaaatcacattggcaacctgatttcatgaaactcatatgatatgaatcaaaacatgtg |
42184077 |
T |
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| Q |
101 |
attctaaacagatatagcaaaagacagatataaactcaccttggttgcttatttgaaccctcaaagctgctattatgcaaagcaagggaagattggagat |
200 |
Q |
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| T |
42184076 |
attctaaacagatatagcaaaatacagatataaactcaccttggttgcttatttgaaccctcaaagctgctattatgcaaagaaagggaagattggagat |
42183977 |
T |
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| Q |
201 |
aaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatattttcttgtagttggattaggagcagccatagtaaaatcaggcacagaaaaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
42183976 |
aaggatgaaggggagtagaagcaagaaaatgtgatgaagatccatattttcttgtagttggattaggaacagccacagtaaaatcaggcacagaaaaagg |
42183877 |
T |
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| Q |
301 |
gttagaatcacaacgagcctttttgatttgatgatgactattgctattgttatttgtgtgaagttccacaggctttcttgaac |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42183876 |
gttagaatcacaacgagcctttttgatttgatgatgactattgctattgttatttgtgtgaagttccacaggctttcttgaac |
42183794 |
T |
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