View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_17 (Length: 372)
Name: NF8672_low_17
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 24 - 363
Target Start/End: Complemental strand, 7389532 - 7389193
Alignment:
| Q |
24 |
tgtaattgattacattcatatatataaccatagcatgctaatcaatcataacatgaagtttgaacatgtagtgcaaaaatggaatattagaaattaaaaa |
123 |
Q |
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| T |
7389532 |
tgtaattgattacattcatatatataaccatagcatgctaatcaatcataacatgaagtttgaacatggagtgcaaaaatggaatattagaaattaaaaa |
7389433 |
T |
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| Q |
124 |
agaggtgcttttgcatgcctatcgttttcttctcgaccccgtgaagatgtgtaaaacaaccatatatagaaatgacaaagtttttgtgacttcctattgt |
223 |
Q |
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| T |
7389432 |
agaggtgcttttgcatgcctatcgttttcttctcgaccccgtgaagatgtgtaatacaaccatatatagaaatgacaaagtttttgtgacttcctattgt |
7389333 |
T |
|
| Q |
224 |
ctcaccaaattcatattaattttcacaaacatttattttgcatcaaattcacatataccatgttttatatatgaatactttaataatttttaatatatgt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7389332 |
ctcaccaaattcatattaattttcacaaacatttattttgtatcaaattcacatataccatgttttatatatgaatactttaataatttttaatatatgt |
7389233 |
T |
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| Q |
324 |
gaaatcaacaaatatctccttgagataaagggagtataat |
363 |
Q |
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| T |
7389232 |
gaaatcaacaaatatctccttgagataaagggagtataat |
7389193 |
T |
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