View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_2 (Length: 595)
Name: NF8672_low_2
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 579
Target Start/End: Original strand, 49547331 - 49547877
Alignment:
| Q |
17 |
attttaatactccaaagatatagactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagtgacccaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49547331 |
attttaatactccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagtgacccaa |
49547430 |
T |
|
| Q |
117 |
cttaatccatcaattaattgcacaaagcttgatcaaattagtctctaaattaccacaaacagtag---aaatatatatacagcnnnnnnnnnnnnngtca |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||| ||| |
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|
| T |
49547431 |
cttaatccatcaattaattgcacaaagtttgatcaaattagtctctaaattaccgcatacagtagtagaaatatatatacagtaaaaaaaaaaa---tca |
49547527 |
T |
|
| Q |
214 |
taataactgcagaaaagtatgaaaatatgagaagtgcaatcaataatcataaaccactaaccagtggtctcaagtttgatttgatgttcctttggtagta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
49547528 |
taataactgcagaaaagtatgaaaatatgagaagtgcaatcaataatcataaaccactaac------------------tttgatgttcctttggcagta |
49547609 |
T |
|
| Q |
314 |
aggtgttgaatcccaaaattaaatctgccctttaagcagcttcttcactctagctgcagtaccttttgaatcaattcttttatccttgaaaccttgcagg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
49547610 |
aggtgttgaatcccaaaattaaatctgccctttaagcagcttcttcactctagctgcagtatcttttgaatcaattcttttatccttgaaaccttgtagg |
49547709 |
T |
|
| Q |
414 |
acttttaaaaactcataataactttccctcttatctt-aaatgcaacttttattgccttaagaagcggtgatgcatctttaaaccctaatgatatgaaag |
512 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49547710 |
acttttgaaaactcataataactttccctcttatcttgaaatgcaacttttattgccttaagaagcggtgatgcatctttaaaccttaatgatatgaaag |
49547809 |
T |
|
| Q |
513 |
tttgaattc-gtgttcctttggcaggaagaaattgaatcccaacattaaattcgagttacctttaaac |
579 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
49547810 |
tttgaattctgtgttcctttggcaggaaggaattgaatcccaacattaaattcgagttccctttaaac |
49547877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 47872667 - 47872526
Alignment:
| Q |
17 |
attttaatactccaaagatatagactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagtgacccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| ||| ||| ||||| ||||| | ||||||| ||||| ||||||||| | ||| |
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|
| T |
47872667 |
attttaatactccaaagatatagactccatcagttcattacatgacaaatttcta-------tcatcgatgtagttcttcaacaatgcagagtgtcacaa |
47872575 |
T |
|
| Q |
117 |
cttaatccatcaattaattgcacaaagcttgatcaaattagtctctaaatta |
168 |
Q |
| |
|
|||||||||||| ||||| |||| || ||||||||||||||||||||| |
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|
| T |
47872574 |
cttaatccatca---aattgtgcaaaatttcatcaaattagtctctaaatta |
47872526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 33857321 - 33857205
Alignment:
| Q |
17 |
attttaatactccaaagatatagactacattagttcatta---cgtgaaaaaattctatcatcactcatcag-tttagttctccaacagtgcagagtgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| || || ||| |||| ||||| ||||| ||| | |
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|
| T |
33857321 |
attttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatca---attagtttttcttcttcaacaatgcagtgtgtc |
33857225 |
T |
|
| Q |
113 |
ccaacttaatccatcaatta |
132 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
33857224 |
acaacttaatccatcaatta |
33857205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 33923602 - 33923718
Alignment:
| Q |
17 |
attttaatactccaaagatatagactacattagttcatta---cgtgaaaaaattctatcatcactcatcag-tttagttctccaacagtgcagagtgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| || || ||| |||| ||||| ||||| ||| | |
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|
| T |
33923602 |
attttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatca---attagtttttcttcttcaacaatgcagtgtgtc |
33923698 |
T |
|
| Q |
113 |
ccaacttaatccatcaatta |
132 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
33923699 |
acaacttaatccatcaatta |
33923718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 33856943 - 33856891
Alignment:
| Q |
285 |
aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
337 |
Q |
| |
|
|||| ||||||||||||||||| | || ||||| ||||||||||||||||||| |
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|
| T |
33856943 |
aagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaat |
33856891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 33923980 - 33924032
Alignment:
| Q |
285 |
aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
337 |
Q |
| |
|
|||| ||||||||||||||||| | || ||||| ||||||||||||||||||| |
|
|
| T |
33923980 |
aagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaat |
33924032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 45191285 - 45191217
Alignment:
| Q |
269 |
actaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
337 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||| || |||| ||||| ||||||||||||| |
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|
| T |
45191285 |
actaaccagtggtgtggagtgtgatttgatgttcctttggcaggaaggcattgaaccccaaaattaaat |
45191217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 49444123 - 49444191
Alignment:
| Q |
218 |
aactgcagaaaagtatgaaaatatgagaagtgcaatcaataatcataaaccactaaccagtggtctcaa |
286 |
Q |
| |
|
||||||||||||| || || ||||||||| | |||| |||| | |||||| |||||||||||||||||| |
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|
| T |
49444123 |
aactgcagaaaagcatcaagatatgagaattacaatgaatagtgataaactactaaccagtggtctcaa |
49444191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 44261863 - 44261909
Alignment:
| Q |
231 |
tatgaaaatatgagaagtgcaatcaataatcataaaccactaaccag |
277 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
44261863 |
tatgaacatatgagaagtgcaatgaataatgataaactactaaccag |
44261909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 47872342 - 47872306
Alignment:
| Q |
238 |
atatgagaagtgcaatcaataatcataaaccactaac |
274 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |
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|
| T |
47872342 |
atatgagaagtgcaatgaataatcataaactactaac |
47872306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 238 - 554
Target Start/End: Complemental strand, 14961593 - 14961270
Alignment:
| Q |
238 |
atatgagaagtgcaatcaataatcataaaccactaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat |
337 |
Q |
| |
|
||||| ||| |||||| ||||||||||||| |||||||||| ||| |||| || || || ||||||| | || ||| |||||||||||||||||| || |
|
|
| T |
14961593 |
atatgtgaaatgcaatgaataatcataaactactaaccagtcgtccaaagtgtggttcaatattccttttgcaggaagatgttgaatcccaaaattagat |
14961494 |
T |
|
| Q |
338 |
c----tgccctttaagcagcttcttcactctagctgcagtaccttttgaatcaattcttttatccttgaaaccttgcaggacttttaaaaactcataata |
433 |
Q |
| |
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| |||||||||||||||| ||| ||||| || || |||| || |||||||| ||||||||||||| ||| | |||||||||||| |||| ||| |
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|
| T |
14961493 |
ctgtatgccctttaagcagctccttgactcttgcagcgacacctcttatatcaattc-tttatccttgaaatcttttatgacttttaaaaagtcattata |
14961395 |
T |
|
| Q |
434 |
actttccctcttatctt-aaatgcaacttttattgccttaagaagcggtgatgcatctttaaaccctaatga---tatgaaagtttgaattcgtgttcct |
529 |
Q |
| |
|
| ||||||||||||||| ||| |||||||| | ||||||| ||| | | |||||||||||||||||||| | || ||||| ||| || ||||||| |
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|
| T |
14961394 |
attttccctcttatcttgaaacgcaactttgactgccttacgaaaggctaatgcatctttaaaccctaataaccctaataaagtgtgatttgatgttcct |
14961295 |
T |
|
| Q |
530 |
ttggcaggaagaaattgaatcccaa |
554 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
14961294 |
ttggcaggaaggtgttgaatcccaa |
14961270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 14961314 - 14961269
Alignment:
| Q |
285 |
aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaa |
330 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
14961314 |
aagtgtgatttgatgttcctttggcaggaaggtgttgaatcccaaa |
14961269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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