View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_20 (Length: 353)
Name: NF8672_low_20
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 37 - 332
Target Start/End: Complemental strand, 3855702 - 3855407
Alignment:
| Q |
37 |
atgaccaagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatcaaaacgttaactcttttgtctgcgtcttg |
136 |
Q |
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| T |
3855702 |
atgaacaagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatcaaaacattaactcttttgtctgcgtcttg |
3855603 |
T |
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| Q |
137 |
cttttgcaactctgcctcgttgcttcgttggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacc |
236 |
Q |
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| T |
3855602 |
cttttgcaactctgcctcgttgcttcgttggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacc |
3855503 |
T |
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| Q |
237 |
cccatttgcttgccacatggcattctaacttattcacctcttgttgttttgaacttgaatgggaatggggtcttaactatacaccatgttcataaa |
332 |
Q |
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| T |
3855502 |
cccatttgcttcccaggtcccattctaacttattcacctcttgttgttttgaacttgaatgggaatggggtcttaatgatataccatgttgataaa |
3855407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 313
Target Start/End: Original strand, 4140973 - 4141197
Alignment:
| Q |
89 |
tgacagacagcctcctatcaaaacgttaactcttttgtctgcgtcttgcttttgcaactctgcctcgttgcttcgttggcttcaccctgtagtcaatggg |
188 |
Q |
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| T |
4140973 |
tgacagacagctacctatcaaaacattaactcttttgtccgcgtctcgcttctgcaactctgcctcgttatgtcattggctttactatgcaatctattgg |
4141072 |
T |
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| Q |
189 |
tttgttgatcatgtcgatctcacttttttgcagca---ctcttccactacccccatttgcttgccacatggcattctaacttattcacctcttgttgttt |
285 |
Q |
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| T |
4141073 |
aaagctgaacatgttgatttcacttttttgcagcagcactcttccgctaccccgatttacttgccaaataacattct---ttgttcaactcttgttgttt |
4141169 |
T |
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| Q |
286 |
tgaacttgaatgggaatggggtcttaac |
313 |
Q |
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| T |
4141170 |
tgaacttgaatgggaatggggtgttaac |
4141197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 41541658 - 41541734
Alignment:
| Q |
229 |
ccactacccccatttgcttgccacatggcattctaacttattcacctcttgttgttttgaacttgaatgggaatggg |
305 |
Q |
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| T |
41541658 |
ccactacccccatttacttgactcagaagattctaatttgttcaactcttgttgttttgaatttgaatgggaatggg |
41541734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 1881510 - 1881567
Alignment:
| Q |
192 |
gttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgc |
249 |
Q |
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| T |
1881510 |
gttgaacatgtcaatctcacttttctgtagcattctcccactacccccatttacttgc |
1881567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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