View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_23 (Length: 344)
Name: NF8672_low_23
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 186 - 326
Target Start/End: Original strand, 7037121 - 7037261
Alignment:
| Q |
186 |
gaaaagaattatgaaatatatgtgtatgtgtgtataacactcaaattgtgacatgtaacagttgatagcttcatccgctgggacattgatattttatgaa |
285 |
Q |
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| T |
7037121 |
gaaaagatttatgaaatatatgtgtatgtgtgtataacactcaaattgtgacatgtaacagttgatagcttcatccactgggacattgatattttatgaa |
7037220 |
T |
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| Q |
286 |
cttcgatagtatataactactactttcatattttggggtct |
326 |
Q |
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| T |
7037221 |
cttcgatagtatataactactactttcatattctggggtct |
7037261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 7036999 - 7037058
Alignment:
| Q |
127 |
taatttaatataatcacagttcatgcatcttttaatacattcatttctatctagttatcg |
186 |
Q |
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| T |
7036999 |
taatttaatataatcacagttcatgcatcttttaatacattcatttctatctagttatcg |
7037058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 7036948 - 7037012
Alignment:
| Q |
18 |
agtagtaactaagctaagtcaaatgagaa--gagcaatttcaaatcattcataatttaatataat |
80 |
Q |
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| T |
7036948 |
agtagtaactaagctaagtcaaatgagaatagagcaatttcaaatcattcataatttaatataat |
7037012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 7036907 - 7036955
Alignment:
| Q |
81 |
tttcctacacaaataaaatacaaacagtaagtatttagaaaagtagtaa |
129 |
Q |
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| T |
7036907 |
tttcctacacaaataaaatacaaccagtaagtatttagaaaagtagtaa |
7036955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 1379282 - 1379333
Alignment:
| Q |
81 |
tttcctacacaaataaaatacaaacag-taagtatttagaaaagtagtaatt |
131 |
Q |
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| T |
1379282 |
tttcctacacaaataaaatacaaacagttaagtatttagaaaagtaataatt |
1379333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 7313035 - 7313086
Alignment:
| Q |
81 |
tttcctacacaaataaaatacaaacag-taagtatttagaaaagtagtaatt |
131 |
Q |
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| T |
7313035 |
tttcctacacaaataaaatacaaacagttaaatatttagaaaagtaataatt |
7313086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 29377565 - 29377616
Alignment:
| Q |
132 |
taatataatcacagttcatgcatcttttaatacattcatttctatctagtta |
183 |
Q |
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| T |
29377565 |
taatataatcacaattcatacatattttcatacattcctttctatctagtta |
29377616 |
T |
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