View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_30 (Length: 313)
Name: NF8672_low_30
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 302325 - 302030
Alignment:
| Q |
1 |
attgaaattttgtaattctggtggatctcaaatggaaattagttagtaaatgtttaacaactttataaagctattgtgatggctagcctttacctctttt |
100 |
Q |
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| T |
302325 |
attgaaattttgtaattctggtggatctcaaatggtaattagttagtaaatgtttaacaactttataaagctattgtgatggctagcctttacctctttt |
302226 |
T |
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| Q |
101 |
tt-ctgttagcaatagctatatgtattgtagtttgttgcttgtagaaagcgtgctattggtagtaagtgatttcaagatcaaataggacgtgaggacgta |
199 |
Q |
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| T |
302225 |
tttctgttagcaatagctatatgtattgtagtttgttgcttgtagaaagcgtgctattggtagtaagtgatttcaagatcaaataggacgtgaggacgta |
302126 |
T |
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| Q |
200 |
ggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataacaattggcatcaga |
295 |
Q |
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| T |
302125 |
ggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataacaattggcatcaga |
302030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 38250300 - 38250393
Alignment:
| Q |
15 |
attctggtggatctcaaatggaaattagttagtaaatgtttaacaactttataaagctattgtgatggctagcctttacctc-ttttttctgtt |
107 |
Q |
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| T |
38250300 |
attctggtggatctcaaatggtaattagtaagtaaatgcctaacaactttataaagctattgcgatagctagcctttgcctcgttttttctgtt |
38250393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 37458986 - 37458896
Alignment:
| Q |
189 |
gtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataa |
281 |
Q |
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| T |
37458986 |
gtgaggacgtaggagaaattgacccgaaccttgataaatcttgtgtcctt--cttctttccttttattgcagtttgctggcccagtttcataa |
37458896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 38250639 - 38250737
Alignment:
| Q |
189 |
gtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataacaattg |
287 |
Q |
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| T |
38250639 |
gtgaggatgtaggagaaattgatccgaacctcaataaatcttgtgctcttaatctctctccttttatcgcagtttgctggctcagtttcataacaattg |
38250737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38255353 - 38255385
Alignment:
| Q |
1 |
attgaaattttgtaattctggtggatctcaaat |
33 |
Q |
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| T |
38255353 |
attgaaattttgtaattctagtggatctcaaat |
38255385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 22178249 - 22178402
Alignment:
| Q |
37 |
aattagttagtaaatgtttaacaactttataaagctattgtgatggctagcctttacctcttttttctgtt---------agcaatagctatatgtattg |
127 |
Q |
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||||||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||||||| | |||| |||||| || || |
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| T |
22178249 |
aattagttagtaaatacctaacaactttgtaaagctactgtgatagctagcctttgcctcttttttctgctttagagagaagcagtagctacataaatct |
22178348 |
T |
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| Q |
128 |
tagtttgttgcttgtagaaagcgtgctattggtagtaagtgatttcaagatcaa |
181 |
Q |
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| T |
22178349 |
tagtttgttgcttgtataaagcatggtattggtggtaagtgatttcaagatcaa |
22178402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 22178507 - 22178605
Alignment:
| Q |
189 |
gtgaggacgtaggagaaattgatccgaacctcgataaatcttgtgtccttgactcctttcctttcattgcagttggttggctcagtttcataacaattgg |
288 |
Q |
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||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||| |
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| T |
22178507 |
gtgaggacgaagaagaaattgatctgaacctcgataaatcttgtg--------tcctttcctttcattgcaatttgctggctcagtttcataacaattgt |
22178598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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