View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8672_low_31 (Length: 311)

Name: NF8672_low_31
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8672_low_31
NF8672_low_31
[»] chr2 (1 HSPs)
chr2 (1-295)||(42408673-42408967)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 42408967 - 42408673
Alignment:
Q  1 aaatctaactgcgccaaagacgacgaaaaaactcacttggaaccacctaagaggagtacacatcaagtttctcttgaaactccttctcagcaagtgcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42408967 aaatctaactgcgccaaagacgacgaaaaaactcacttggaaccacctaagaggagtacacatcaagtttctcttgaaactacttctcagcaagtgcctg 42408868  T
Q  101 actttacacccccttggggtgttgatgacttattggagttagcagactttaattctcatgacaaagtaagacttacaactttatttcataattggaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42408867 actttacacccccttggggtgttgatgacttattggagttagcagactttaattcccatgacaaagtaagacttacaactttatttcataattggaatta 42408768  T
Q  201 catatatgtcatgaacactaacacaaaatttgttacatgtccttagttaattaatcgattttaaactttgtttttagtccttcaatccacttttc 295  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  42408767 catatatgtcatgaacactaacacaaaatttgtaacatgtccttagttgattaatcgattttaaacttcgtttttagtcctttaatccacttttc 42408673  T

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