View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8672_low_35 (Length: 300)
Name: NF8672_low_35
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 149 - 280
Target Start/End: Complemental strand, 16687454 - 16687323
Alignment:
| Q |
149 |
aacacatcaatgatgtctgaaagacgcatgtgatctttaactcgagtactccaactttggttacaaacatttagaatagaaagatcagaagaagtatcaa |
248 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16687454 |
aacacatcaatgatgtctgaaagaaacatgtgatcgttaactcgagtactccaactttggttacaaacatttagaatagaaagatcagaagaagtatcaa |
16687355 |
T |
|
| Q |
249 |
taatatatacaatgaaatgctgaagccataaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16687354 |
taatatatacaatgaaatgctgaagccataaa |
16687323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 16687775 - 16687639
Alignment:
| Q |
1 |
agcggaaagagacttgcaaaacaagtcagcactctaacgctcaaatgagtgaagagaaatgaggaggaaagcgtgcgaaaagttgtgaaattgtcatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
16687775 |
agcggaaagagacttgcaaaacaagttagcactctaacgctcaaatgagtgacgagaaatgaggaggaaagtgtgcgaaaagtggtgaaattgtcatcgt |
16687676 |
T |
|
| Q |
101 |
agcttgagtgtgacattaagtcgcacttttatatcct |
137 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
16687675 |
agcttgagtgtgacgttaagtcgcgcttctatatcct |
16687639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University