View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8672_low_36 (Length: 286)
Name: NF8672_low_36
Description: NF8672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8672_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 23826643 - 23826898
Alignment:
| Q |
19 |
tctagtgagagcaactagctaaaaacaaatgtaggatgcaacaagaaaatccagtggactagaaagttttgcaaacgatattaaggagtttgtggaaaaa |
118 |
Q |
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| T |
23826643 |
tctagtgagagcaactagctaaaaacaaatgtaggatgcaacaagaaaatccagtggactagaaagttttgcaaaccatattaaggagtttgtagaaaaa |
23826742 |
T |
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| Q |
119 |
agtttcc-tttccaaacaaaacnnnnnnnggggtccattacagttacaccatgcttctgttcccataacatgtactacaatacaatgaatgtgatgttac |
217 |
Q |
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| T |
23826743 |
agtttccctttccaaacaaaacaaaaaaaggggtcccttacagttacaccatgcttctgttcccataacatgcactacaatacaatgaatgtgatgttac |
23826842 |
T |
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| Q |
218 |
atgcatgaatcaccatactcactttccttcgttctcagcatctttctcatatgtct |
273 |
Q |
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| T |
23826843 |
atgcatgaatcaccatactcactttccttcgttctcagcatctttctcatatgtct |
23826898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 23817301 - 23817341
Alignment:
| Q |
147 |
ggggtccattacagttacaccatgcttctgttcccataaca |
187 |
Q |
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| T |
23817301 |
ggggtccattacagttacaccatgcttctattcccataaca |
23817341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 249
Target Start/End: Original strand, 23830920 - 23830952
Alignment:
| Q |
217 |
catgcatgaatcaccatactcactttccttcgt |
249 |
Q |
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| T |
23830920 |
catgcatgaatcaccatactcaccttccttcgt |
23830952 |
T |
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